API for acidgenomics/bioverbs
S4 Generic Functions for Bioinformatics

Global functions
aggregateCellsToSamples Man page
aggregateCols Man page
aggregateReplicates Man page
aggregateRows Man page
alphaSummary Man page
alphaThreshold Man page
alphaThreshold<- Man page
atomize Man page
autopadZeros Man page
barcodeRanksPerSample Man page
bioverbs Man page
bioverbs-package Man page
camel Man page
capitalize Man page
cell2sample Man page
cellCountsPerCluster Man page
cellTypesPerCluster Man page
clusterCellCountsPerSample Man page
clusterID Man page
collapseToString Man page
collectionNames Man page
collectionNames<- Man page
contrastName Man page
contrastNames Man page
contrastNames<- Man page
contrastSamples Man page
convertGenesToSymbols Man page
convertSampleIDsToNames Man page
convertSymbolsToGenes Man page
convertTranscriptsToGenes Man page
defunct Man page
deg Man page
deprecated Man page
diffExp Man page
diffExpPerCluster Man page
dotted Man page
encode Man page
enrichedGeneSets Man page
export Man page
factorize Man page
filterCells Man page
findMarkers Man page
flatFiles Man page
foldChangeToLogRatio Man page
fpkm Man page
geneNames Man page
geometricMean Man page
headtail Man page
humanize Man page
interestingGroups Man page
interestingGroups<- Man page
kebab Man page
lfcThreshold Man page
lfcThreshold<- Man page
logRatioToFoldChange Man page
mapGenesToIDs Man page
mapGenesToRownames Man page
mapGenesToSymbols Man page
markdown Man page
mcolnames Man page
mcolnames<- Man page
meltCounts Man page
metrics Man page
metricsPerSample Man page
params Man page
plot5Prime3PrimeBias Man page
plotBarcodeRanks Man page
plotCellCounts Man page
plotCellCountsPerCluster Man page
plotCellTypesPerCluster Man page
plotCorrelationHeatmap Man page
plotCountDensity Man page
plotCounts Man page
plotCountsPerBiotype Man page
plotCountsPerBroadClass Man page
plotCountsPerFeature Man page
plotCountsPerGene Man page
plotDEGHeatmap Man page
plotDEGPCA Man page
plotDEGUpset Man page
plotDot Man page
plotEnrichedGeneSets Man page
plotEnrichedUpset Man page
plotExonicMappingRate Man page
plotFeature Man page
plotFeaturesDetected Man page
plotGSEATable Man page
plotGenderMarkers Man page
plotGene Man page
plotGeneSaturation Man page
plotGenesDetected Man page
plotGenesPerCell Man page
plotHeatmap Man page
plotIntergenicMappingRate Man page
plotIntronicMappingRate Man page
plotKnownMarkers Man page
plotMappedReads Man page
plotMappingRate Man page
plotMarker Man page
plotMeanSD Man page
plotMitoRatio Man page
plotMitoVsCoding Man page
plotNovelty Man page
plotPCACovariates Man page
plotPCElbow Man page
plotQC Man page
plotQuantileHeatmap Man page
plotRRNAMappingRate Man page
plotReadsPerCell Man page
plotReducedDim Man page
plotTSNE Man page
plotTopMarkers Man page
plotTotalCounts Man page
plotTotalReads Man page
plotUMAP Man page
plotUMIsPerCell Man page
plotUMIsVsGenes Man page
plotViolin Man page
plotVolcano Man page
plotZerosVsDepth Man page
pseudobulk Man page
rankedList Man page
relativeLogExpression Man page
removeNA Man page
results Man page
resultsMatrix Man page
resultsNames Man page
resultsTables Man page
sampleData Man page
sampleData<- Man page
sanitizeNA Man page
sanitizePercent Man page
selectSamples Man page
snake Man page
stripTranscriptVersions Man page
subsetPerSample Man page
tmm Man page
topCellsPerSample Man page
topMarkers Man page
topTables Man page
uniteInterestingGroups Man page
upperCamel Man page
zerosVsDepth Man page
acidgenomics/bioverbs documentation built on July 19, 2019, 8:57 a.m.