Files in acidgenomics/bioverbs
S4 Generic Functions for Bioinformatics

.Rbuildignore
.gitignore
.lintr
.travis.yml
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/aggregateCellsToSamples.R R/aggregateCols.R R/aggregateReplicates.R R/aggregateRows.R R/alphaSummary.R R/alphaThreshold.R R/atomize.R R/autopadZeros.R R/barcodeRanksPerSample.R R/camel.R R/capitalize.R R/cell2sample.R R/cellCountsPerCluster.R R/cellTypesPerCluster.R R/clusterCellCountsPerSample.R R/clusterID.R R/collapseToString.R R/collectionNames.R R/contrastName.R R/contrastNames.R R/contrastSamples.R R/convertGenesToSymbols.R R/convertSampleIDsToNames.R R/convertSymbolsToGenes.R R/convertTranscriptsToGenes.R R/deg.R R/deprecated.R R/diffExp.R R/diffExpPerCluster.R R/dotted.R R/encode.R R/enrichedGeneSets.R R/export.R R/factorize.R R/filterCells.R R/findMarkers.R R/flatFiles.R R/foldChangeToLogRatio.R R/fpkm.R R/geneNames.R R/geometricMean.R R/headtail.R R/humanize.R R/interestingGroups.R R/kebab.R R/lfcThreshold.R R/logRatioToFoldChange.R R/mapGenesToIDs.R R/mapGenesToRownames.R R/mapGenesToSymbols.R R/markdown.R R/mcolnames.R R/meltCounts.R R/metrics.R R/metricsPerSample.R R/package.R R/params.R R/plot5Prime3PrimeBias.R R/plotBarcodeRanks.R R/plotCellCounts.R R/plotCellCountsPerCluster.R R/plotCellTypesPerCluster.R R/plotCorrelationHeatmap.R R/plotCountDensity.R R/plotCounts.R R/plotCountsPerBiotype.R R/plotCountsPerBroadClass.R R/plotCountsPerFeature.R R/plotCountsPerGene.R R/plotDEGHeatmap.R R/plotDEGPCA.R R/plotDEGUpset.R R/plotDot.R R/plotEnrichedGeneSets.R R/plotEnrichedUpset.R R/plotExonicMappingRate.R R/plotFeature.R R/plotFeaturesDetected.R R/plotGSEATable.R R/plotGenderMarkers.R R/plotGeneSaturation.R R/plotGenesDetected.R R/plotGenesPerCell.R R/plotHeatmap.R R/plotIntergenicMappingRate.R R/plotIntronicMappingRate.R R/plotKnownMarkers.R R/plotMappedReads.R R/plotMappingRate.R R/plotMarker.R R/plotMeanSD.R R/plotMitoRatio.R R/plotMitoVsCoding.R R/plotNovelty.R R/plotPCACovariates.R R/plotPCElbow.R R/plotQC.R R/plotQuantileHeatmap.R R/plotRRNAMappingRate.R R/plotReadCountsPerCell.R R/plotReducedDim.R R/plotTSNE.R R/plotTopMarkers.R R/plotTotalCounts.R R/plotTotalReads.R R/plotUMAP.R R/plotUMIsPerCell.R R/plotUMIsVsGenes.R R/plotViolin.R R/plotVolcano.R R/plotZerosVsDepth.R R/pseudobulk.R R/rankedList.R R/relativeLogExpression.R R/removeNA.R R/results.R R/resultsMatrix.R R/resultsNames.R R/resultsTables.R R/sampleData.R R/sanitizeNA.R R/sanitizePercent.R R/selectSamples.R R/snake.R R/stripTranscriptVersions.R R/subsetPerSample.R R/tmm.R R/topCellsPerSample.R R/topMarkers.R R/topTables.R R/uniteInterestingGroups.R R/upperCamel.R R/zerosVsDepth.R README.md
_pkgdown.yml
appveyor.yml
bioverbs.Rproj
docker-failure.sh
docker.sh
docs/404.html
docs/CNAME
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/extra.css
docs/index.html
docs/link.svg
docs/news/index.html
docs/news/news-0.1.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/aggregateCellsToSamples.html
docs/reference/aggregateCols.html
docs/reference/aggregateReplicates.html
docs/reference/aggregateRows.html
docs/reference/alphaSummary.html
docs/reference/alphaThreshold.html
docs/reference/atomize.html
docs/reference/autopadZeros.html
docs/reference/barcodeRanksPerSample.html
docs/reference/bioverbs-package.html
docs/reference/camel.html
docs/reference/capitalize.html
docs/reference/cell2sample.html
docs/reference/cellCountsPerCluster.html
docs/reference/cellTypesPerCluster.html
docs/reference/clusterCellCountsPerSample.html
docs/reference/clusterID.html
docs/reference/collapseToString.html
docs/reference/collectionNames.html
docs/reference/contrastName.html
docs/reference/contrastNames.html
docs/reference/contrastSamples.html
docs/reference/convertGenesToSymbols.html
docs/reference/convertSampleIDsToNames.html
docs/reference/convertSymbolsToGenes.html
docs/reference/convertTranscriptsToGenes.html
docs/reference/defunct.html
docs/reference/deg.html
docs/reference/deprecated.html
docs/reference/diffExp.html
docs/reference/diffExpPerCluster.html
docs/reference/dotted.html
docs/reference/encode.html
docs/reference/enrichedGeneSets.html
docs/reference/export.html
docs/reference/factorize.html
docs/reference/filterCells.html
docs/reference/findMarkers.html
docs/reference/flatFiles.html
docs/reference/foldChangeToLogRatio.html
docs/reference/fpkm.html
docs/reference/geneNames.html
docs/reference/geometricMean.html
docs/reference/headtail.html
docs/reference/humanize.html
docs/reference/index.html
docs/reference/interestingGroups.html
docs/reference/kebab.html
docs/reference/lfcThreshold.html
docs/reference/logRatioToFoldChange.html
docs/reference/mapGenesToIDs.html
docs/reference/mapGenesToRownames.html
docs/reference/mapGenesToSymbols.html
docs/reference/markdown.html
docs/reference/mcolnames.html
docs/reference/meltCounts.html
docs/reference/metrics.html
docs/reference/metricsPerSample.html
docs/reference/params.html
docs/reference/plot5Prime3PrimeBias.html
docs/reference/plotBarcodeRanks.html
docs/reference/plotCellCounts.html
docs/reference/plotCellCountsPerCluster.html
docs/reference/plotCellTypesPerCluster.html
docs/reference/plotCorrelationHeatmap.html
docs/reference/plotCountDensity.html
docs/reference/plotCounts.html
docs/reference/plotCountsPerBiotype.html
docs/reference/plotCountsPerBroadClass.html
docs/reference/plotCountsPerFeature.html
docs/reference/plotCountsPerGene.html
docs/reference/plotDEGHeatmap.html
docs/reference/plotDEGPCA.html
docs/reference/plotDEGUpset.html
docs/reference/plotDot.html
docs/reference/plotEnrichedGeneSets.html
docs/reference/plotEnrichedUpset.html
docs/reference/plotExonicMappingRate.html
docs/reference/plotFeature.html
docs/reference/plotFeaturesDetected.html
docs/reference/plotGSEATable.html
docs/reference/plotGenderMarkers.html
docs/reference/plotGeneSaturation.html
docs/reference/plotGenesDetected.html
docs/reference/plotGenesPerCell.html
docs/reference/plotHeatmap.html
docs/reference/plotIntergenicMappingRate.html
docs/reference/plotIntronicMappingRate.html
docs/reference/plotKnownMarkers.html
docs/reference/plotMappedReads.html
docs/reference/plotMappingRate.html
docs/reference/plotMarker.html
docs/reference/plotMeanSD.html
docs/reference/plotMitoRatio.html
docs/reference/plotMitoVsCoding.html
docs/reference/plotNovelty.html
docs/reference/plotPCACovariates.html
docs/reference/plotPCElbow.html
docs/reference/plotQC.html
docs/reference/plotQuantileHeatmap.html
docs/reference/plotRRNAMappingRate.html
docs/reference/plotReadsPerCell.html
docs/reference/plotReducedDim.html
docs/reference/plotTSNE.html
docs/reference/plotTopMarkers.html
docs/reference/plotTotalCounts.html
docs/reference/plotTotalReads.html
docs/reference/plotUMAP.html
docs/reference/plotUMIsPerCell.html
docs/reference/plotUMIsVsGenes.html
docs/reference/plotViolin.html
docs/reference/plotVolcano.html
docs/reference/plotZerosVsDepth.html
docs/reference/pseudobulk.html
docs/reference/rankedList.html
docs/reference/relativeLogExpression.html
docs/reference/removeNA.html
docs/reference/results.html
docs/reference/resultsMatrix.html
docs/reference/resultsNames.html
docs/reference/resultsTables.html
docs/reference/sampleData.html
docs/reference/sanitizeNA.html
docs/reference/sanitizePercent.html
docs/reference/selectSamples.html
docs/reference/snake.html
docs/reference/stripTranscriptVersions.html
docs/reference/subsetPerSample.html
docs/reference/tmm.html
docs/reference/topCellsPerSample.html
docs/reference/topMarkers.html
docs/reference/topTables.html
docs/reference/uniteInterestingGroups.html
docs/reference/upperCamel.html
docs/reference/zerosVsDepth.html
man/aggregateCellsToSamples.Rd man/aggregateCols.Rd man/aggregateReplicates.Rd man/aggregateRows.Rd man/alphaSummary.Rd man/alphaThreshold.Rd man/atomize.Rd man/autopadZeros.Rd man/barcodeRanksPerSample.Rd man/bioverbs-package.Rd man/camel.Rd man/capitalize.Rd man/cell2sample.Rd man/cellCountsPerCluster.Rd man/cellTypesPerCluster.Rd man/clusterCellCountsPerSample.Rd man/clusterID.Rd man/collapseToString.Rd man/collectionNames.Rd man/contrastName.Rd man/contrastNames.Rd man/contrastSamples.Rd man/convertGenesToSymbols.Rd man/convertSampleIDsToNames.Rd man/convertSymbolsToGenes.Rd man/convertTranscriptsToGenes.Rd man/defunct.Rd man/deg.Rd man/deprecated.Rd man/diffExp.Rd man/diffExpPerCluster.Rd man/dotted.Rd man/encode.Rd man/enrichedGeneSets.Rd man/export.Rd man/factorize.Rd man/filterCells.Rd man/findMarkers.Rd man/flatFiles.Rd man/foldChangeToLogRatio.Rd man/fpkm.Rd man/geneNames.Rd man/geometricMean.Rd man/headtail.Rd man/humanize.Rd man/interestingGroups.Rd man/kebab.Rd man/lfcThreshold.Rd man/logRatioToFoldChange.Rd man/mapGenesToIDs.Rd man/mapGenesToRownames.Rd man/mapGenesToSymbols.Rd man/markdown.Rd man/mcolnames.Rd man/meltCounts.Rd man/metrics.Rd man/metricsPerSample.Rd man/params.Rd man/plot5Prime3PrimeBias.Rd man/plotBarcodeRanks.Rd man/plotCellCounts.Rd man/plotCellCountsPerCluster.Rd man/plotCellTypesPerCluster.Rd man/plotCorrelationHeatmap.Rd man/plotCountDensity.Rd man/plotCounts.Rd man/plotCountsPerBiotype.Rd man/plotCountsPerBroadClass.Rd man/plotCountsPerFeature.Rd man/plotCountsPerGene.Rd man/plotDEGHeatmap.Rd man/plotDEGPCA.Rd man/plotDEGUpset.Rd man/plotDot.Rd man/plotEnrichedGeneSets.Rd man/plotEnrichedUpset.Rd man/plotExonicMappingRate.Rd man/plotFeature.Rd man/plotFeaturesDetected.Rd man/plotGSEATable.Rd man/plotGenderMarkers.Rd man/plotGeneSaturation.Rd man/plotGenesDetected.Rd man/plotGenesPerCell.Rd man/plotHeatmap.Rd man/plotIntergenicMappingRate.Rd man/plotIntronicMappingRate.Rd man/plotKnownMarkers.Rd man/plotMappedReads.Rd man/plotMappingRate.Rd man/plotMarker.Rd man/plotMeanSD.Rd man/plotMitoRatio.Rd man/plotMitoVsCoding.Rd man/plotNovelty.Rd man/plotPCACovariates.Rd man/plotPCElbow.Rd man/plotQC.Rd man/plotQuantileHeatmap.Rd man/plotRRNAMappingRate.Rd man/plotReadsPerCell.Rd man/plotReducedDim.Rd man/plotTSNE.Rd man/plotTopMarkers.Rd man/plotTotalCounts.Rd man/plotTotalReads.Rd man/plotUMAP.Rd man/plotUMIsPerCell.Rd man/plotUMIsVsGenes.Rd man/plotViolin.Rd man/plotVolcano.Rd man/plotZerosVsDepth.Rd man/pseudobulk.Rd man/rankedList.Rd man/relativeLogExpression.Rd man/removeNA.Rd man/results.Rd man/resultsMatrix.Rd man/resultsNames.Rd man/resultsTables.Rd man/sampleData.Rd man/sanitizeNA.Rd man/sanitizePercent.Rd man/selectSamples.Rd man/snake.Rd man/stripTranscriptVersions.Rd man/subsetPerSample.Rd man/tmm.Rd man/topCellsPerSample.Rd man/topMarkers.Rd man/topTables.Rd man/uniteInterestingGroups.Rd man/upperCamel.Rd man/zerosVsDepth.Rd
pkgdown/extra.css
rcmdcheck.sh
acidgenomics/bioverbs documentation built on July 19, 2019, 8:57 a.m.