tmm: Trimmed mean of M-values
In acidgenomics/bioverbs: Acid Genomics Generics
tmm R Documentation
Trimmed mean of M-values
Description
TMM normalization is recommended for RNA-seq data generally when the majority
of genes are not differentially expressed.
Usage
tmm(object, ...)
Arguments
object
Object.
...
Additional arguments.
Value
matrix.
Note
Only recommended for gene-level counts.
References
Robinson and Oshlack (2010).
See Also
-
edgeR::calcNormFactors().
-
edgeR::cpm().
Examples
showMethods("tmm")
acidgenomics/bioverbs documentation built on June 10, 2025, 7:56 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| tmm | R Documentation |
Trimmed mean of M-values
Description
TMM normalization is recommended for RNA-seq data generally when the majority of genes are not differentially expressed.
Usage
tmm(object, ...)
Arguments
object |
Object. |
... |
Additional arguments. |
Value
matrix.
Note
Only recommended for gene-level counts.
References
Robinson and Oshlack (2010).
See Also
-
edgeR::calcNormFactors(). -
edgeR::cpm().
Examples
showMethods("tmm")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.