NEWS.md

In acidgenomics/cBioPortalAnalysis: cBioPortal Analysis Utilities

cBioPortalAnalysis 0.1.0 (2022-06-06)

Major changes

• Now requiring R 4.2 / Bioconductor 3.15.
• Added code coverage using testthat, and updated lintr checks.

Minor changes

• Updated NAMESPACE, splitting out basejump imports into original packages.

cBioPortalAnalysis 0.0.2 (2021-02-26)

Major changes

• Reworked rnaSeqData function to return as SummarizedExperiment. Only a single cancerStudy is now intentionally supported per function call, making looping a little bit easier to grasp.
• Added support via clinicalData for downloading of patient and cell line metadata, which gets defined into colData for the SummarizedExperiment now returned by rnaSeqData.

Minor changes

• Simplified the NAMESPACE, using the basejump v0.14 release series.
• Removed dependency on dplyr, rlang, and other tidyverse software.
• Hardened internal assert checks.

cBioPortalAnalysis 0.0.1 (2020-10-09)

Initial release.

acidgenomics/cBioPortalAnalysis documentation built on Jan. 10, 2024, 6:29 p.m.