R/imports.R

In acidgenomics/cBioPortalAnalysis: cBioPortal Analysis Utilities

## S4 classes ==================================================================

#' @importClassesFrom S4Vectors DataFrame
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## S4 generics and methods =====================================================

#' @importFrom AcidGenerics camelCase makeDimnames makeNames sanitizeNA
#' @importFrom BiocGenerics do.call lapply rbind sort unique
#'
#' @importMethodsFrom pipette sanitizeNA
#' @importMethodsFrom syntactic camelCase makeDimnames makeNames
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## Standard functions ==========================================================

#' @importFrom AcidCLI abort alert alertWarning
#' @importFrom AcidExperiment makeSummarizedExperiment
#' @importFrom IRanges CharacterList
#' @importFrom cgdsr CGDS getCancerStudies getCaseLists getClinicalData
#' getGeneticProfiles getProfileData
#' @importFrom goalie assert hasColnames hasNoDuplicates hasRownames hasRows
#' isCharacter isInt isString isSubset
#' @importFrom methods as is
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