EnsemblToNcbi: Ensembl-to-NCBI gene identifier mappings

In acidgenomics/r-acidgenomes: Acid Genomics Genome Annotations

Ensembl-to-NCBI gene identifier mappings

Description

Ensembl-to-NCBI gene identifier mappings

Usage

EnsemblToNcbi(object, ...)

## S4 method for signature 'EnsemblGenes'
EnsemblToNcbi(object, useCurated = TRUE)

## S4 method for signature 'GencodeGenes'
EnsemblToNcbi(object, useCurated = TRUE)

## S4 method for signature 'Hgnc'
EnsemblToNcbi(object)

## S4 method for signature 'Mgi'
EnsemblToNcbi(object)

## S4 method for signature 'character'
EnsemblToNcbi(object, organism = NULL)

Arguments

object	Object.
useCurated	logical(1). Applies to Homo sapiens and Mus musculus only currently. Use current curated mappings from HGNC (human) or MGI (mouse).
organism	character(1). Full Latin organism name (e.g. "Homo sapiens").
...	Additional arguments.

Value

EnsemblToNcbi.

Note

Updated 2023-11-28.

Examples

## character ====
x <- EnsemblToNcbi(
    object = c("ENSG00000000005.6", "ENSG00000000003.16"),
    organism = "Homo sapiens"
)
print(x)

acidgenomics/r-acidgenomes documentation built on Jan. 12, 2024, 4:06 a.m.