EnsemblToNcbi: Ensembl-to-NCBI gene identifier mappings

EnsemblToNcbiR Documentation

Ensembl-to-NCBI gene identifier mappings

Description

Ensembl-to-NCBI gene identifier mappings

Usage

EnsemblToNcbi(object, ...)

## S4 method for signature 'EnsemblGenes'
EnsemblToNcbi(object, useCurated = TRUE)

## S4 method for signature 'GencodeGenes'
EnsemblToNcbi(object, useCurated = TRUE)

## S4 method for signature 'Hgnc'
EnsemblToNcbi(object)

## S4 method for signature 'Mgi'
EnsemblToNcbi(object)

## S4 method for signature 'character'
EnsemblToNcbi(object, organism = NULL)

Arguments

object

Object.

useCurated

logical(1). Applies to Homo sapiens and Mus musculus only currently. Use current curated mappings from HGNC (human) or MGI (mouse).

organism

character(1). Full Latin organism name (e.g. "Homo sapiens").

...

Additional arguments.

Value

EnsemblToNcbi.

Note

Updated 2023-11-28.

Examples

## character ====
x <- EnsemblToNcbi(
    object = c("ENSG00000000005.6", "ENSG00000000003.16"),
    organism = "Homo sapiens"
)
print(x)

acidgenomics/r-acidgenomes documentation built on Jan. 12, 2024, 4:06 a.m.