makeProteinToGene: Map protein identifiers to genes

In acidgenomics/r-acidgenomes: Acid Genomics Genome Annotations

Map protein identifiers to genes

Description

Map protein identifiers to genes

Usage

makeProteinToGeneFromEnsembl(
  ids,
  organism = NULL,
  genomeBuild = NULL,
  release = NULL
)

Arguments

ids	character. Ensembl protein identifiers. Human proteins are prefixed with "ENSP", for example.
organism	character(1). Full Latin organism name (e.g. "Homo sapiens").
genomeBuild	character(1). Ensembl genome build assembly name (e.g. "GRCh38"). If set NULL, defaults to the most recent build available. Note: don't pass in UCSC build IDs (e.g. "hg38").
release	integer(1). Ensembl release version (e.g. 100). We recommend setting this value if possible, for improved reproducibility. When left unset, the latest release available via AnnotationHub/ensembldb is used. Note that the latest version available can vary, depending on the versions of AnnotationHub and ensembldb in use.

Value

ProteinToGene.

Note

Updated 2023-09-16.

Examples

ids <- c("ENSP00000238714", "ENSP00000338157")
object <- makeProteinToGeneFromEnsembl(ids)
print(object)

acidgenomics/r-acidgenomes documentation built on Jan. 12, 2024, 4:06 a.m.