ac.exp: Experiment
In acorg/acutilsLite: A package for working with CPE databases

Experiment

An experiment entry (exp) is an environment containing some of:

name
id	6 random capitals and numerics
description
comments
results	See below

The results field contains a list, each with the assay results from a single original titer table from a collaborating group. Each of these entries is itself a list, containing: #'

lab	Where the experiment was carried out
assay	HI or FRA
conducted_by	Who carried out the assay
date
comments
file	Name of the original titer table file in databases repo
antigen_ids
serum_ids
titers	Titer table wihth '*' denoting a missing value
meta

Notably, the parent environment is always the empty environment; $.parent is the backbone-wise parent antigen entry; alteration$.parent is the origin antigen for a transplanted gene

It has classes c("acdatabase.ag", "acdatabase.entry", "environment")

acorg/acutilsLite documentation built on Feb. 19, 2021, 4:56 p.m.