agdb.checkAG: Check antigen entry formatting

In acorg/acutilsLite: A package for working with CPE databases

Description

Checks that a proposed antigen entry follows the formatting rules. See ?ag for more details on antigen objects.

Usage

agdb.checkAG(ag, null_permitted = F)

Arguments

ag	environment: a proposed antigen entry
null_permitted	bool: whether NULL should return T or F

Details

The following are currently checked:

1. class is c("acdatabase.ag", "acdatabase.entry", "environment")

2. only permitted fields are entered

3. all names (strain, long. type, subtype, lineage) are characters

4. construct checkers are fulfilled for : id, parent_id, alterations, genes, isolation, passage, .parent.

Value

bool

acorg/acutilsLite documentation built on Feb. 19, 2021, 4:56 p.m.