agdb.checkalterations: Check an antigen alterations entry

In acorg/acutilsLite: A package for working with CPE databases

Description

Checks if a proposed alterations entry follows the formatting rules.

Usage

agdb.checkalterations(alterations)

Arguments

alterations	char: A proposed alterations entry
null_permitted	bool: whether NULL should return T or F

Details

The following rules are currently checked:

1. alterations is a list

2. only permitted fields are present for each alteration in alterations

3. all substitutions are valid

4. all parent_id's are valid

5. all .parent's are valid antigens

Value

character

acorg/acutilsLite documentation built on Feb. 19, 2021, 4:56 p.m.