Man pages for acranej/InProgress
Need a name
| bnd_matching | match breakends |
| check_reformat | reformat for matching |
| closest_germline | Determines distance to nearest germline event |
| closest_line_sine | Annotate LINE and SINE elements |
| find_closest_match_line | annotates the closest line element |
| find_closest_match_sine | annotates the closest sine element |
| funct_annot | Annotates SVs |
| fuzzy_filter_germline | Distance to closest germline annotator |
| gnomad_germline_hg19all | gNOMAD dataset to fuzzy filter |
| gnomad_germline_hg38all | gNOMAD dataset to fuzzy filter |
| hg19_exonlocations | Ensembl exon coordinates |
| hg19_gencode_genelocations | Gencode gene coordinates, subset to protein coding |
| hg38_ensembl_exonlocations | Ensembl exon coordinates |
| hg38_gencode_genelocations | Gencode gene coordinates, subset to protein coding |
| impact_annotation | Clqssificatiion decision tree for annotation |
| LINE_dt_hg19 | Line repeatmaskers |
| LINE_dt_hg38 | Line repeatmaskers |
| manta_vcf2bedpe | Converts MANTA VCFs to Bedpe format |
| SINE_dt_hg19 | Sine repeatmaskers |
| SINE_dt_hg38 | Sine repeatmaskers |
| svaba_vcf2bedpe | Converts SVABA VCFs to Bedpe format |
