closest_line_sine: Annotate LINE and SINE elements
In acranej/InProgress: Need a name
View source: R/line_sine_annotation.R
closest_line_sine R Documentation
Annotate LINE and SINE elements
Description
Annotates the distance to nearest LINE and SINE element using repeat masker elements from RepeatMasker.
Annotation is in hg38.
Usage
closest_line_sine(bp = NULL, genome = NULL, cores = 1)
Arguments
bp
Bedpe from svaba_vcf2bedpe or manta_vcf2bedpe
genome
run under hg19 or hg38
cores
Number of cores to run on, default is 1
Details
Wrapper for LINE/SINE annotation
Value
Bedpe with a columns added for distance to nearest LINE and SINE element
acranej/InProgress documentation built on April 25, 2022, 5:30 a.m.
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View source: R/line_sine_annotation.R
| closest_line_sine | R Documentation |
Annotate LINE and SINE elements
Description
Annotates the distance to nearest LINE and SINE element using repeat masker elements from RepeatMasker. Annotation is in hg38.
Usage
closest_line_sine(bp = NULL, genome = NULL, cores = 1)
Arguments
bp |
Bedpe from svaba_vcf2bedpe or manta_vcf2bedpe |
genome |
run under hg19 or hg38 |
cores |
Number of cores to run on, default is 1 |
Details
Wrapper for LINE/SINE annotation
Value
Bedpe with a columns added for distance to nearest LINE and SINE element
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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