closest_germline: Determines distance to nearest germline event
In acranej/InProgress: Need a name
closest_germline R Documentation
Determines distance to nearest germline event
Description
Uses gnomAD to annotate the nearest germline event to each structural variant.
For more information read gnomAD blog. Reference is in hg38.
Usage
closest_germline(bp = NULL, cores = 1, genome = NULL)
Arguments
bp
Bedpe from svaba_vcf2bedpe or manta_vcf2bedpe
cores
Number of cores to run on, default is 1
genome
run under hg19 or hg38
Value
Bedpe with a column added for distance to nearest germline event
acranej/InProgress documentation built on April 25, 2022, 5:30 a.m.
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| closest_germline | R Documentation |
Determines distance to nearest germline event
Description
Uses gnomAD to annotate the nearest germline event to each structural variant. For more information read gnomAD blog. Reference is in hg38.
Usage
closest_germline(bp = NULL, cores = 1, genome = NULL)
Arguments
bp |
Bedpe from svaba_vcf2bedpe or manta_vcf2bedpe |
cores |
Number of cores to run on, default is 1 |
genome |
run under hg19 or hg38 |
Value
Bedpe with a column added for distance to nearest germline event
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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