postprocess_chain: more postprocessing of MCMC output

In ada-w-yan/deltaomicron1: Fit model to Delta and Omicron growth curves with and without Camostat

more postprocessing of MCMC output

Description

more postprocessing of MCMC output

Usage

postprocess_chain(
  chain,
  parTab,
  data_df,
  bind_summary_to_chain_partial,
  calc_residuals,
  get_prediction_ci_df,
  filename,
  combined_flag
)

Arguments

chain	data frame containing MCMC chain
parTab	data frame of model parameters created by specify_parameters
bind_summary_to_chain_partial	closure created by postprocess_for_plotting used to calculate summary statistics and bind them to chain
calc_residuals	closure. NULL or function to calculate residuals
get_prediction_ci_df	closure. NULL or function to calculate credible intervals for model predictions
filename	character vector of length 1: name of .RData file outputted by MCMC
combined_flag	logical. INdicates whether this chain is combined from parallel chains that have converged
data	data frame of data used for fitting in MCMC

ada-w-yan/deltaomicron1 documentation built on June 24, 2022, 5:41 a.m.