run_exp_camostat_amphoB: estimate parameters for the different models in the study

In ada-w-yan/deltaomicron1: Fit model to Delta and Omicron growth curves with and without Camostat

estimate parameters for the different models in the study

Description

estimate parameters for the different models in the study

Usage

run_exp_camostat_amphoB(
  save_dir,
  strain,
  camostat_vec,
  amphoB_vec,
  Calu3 = FALSE,
  PCR = FALSE,
  mvr = TRUE,
  length_run = 2,
  run_flag = TRUE
)

Arguments

save_dir	string ending in "/": directory to save results in
strain	character vector. names of strains.
camostat_vec	logical vector of length n, where n is the number of conditions. Each value indicates whether camostat was used in the condition.
amphoB_vec	logical vector of length n, where n is the number of conditions. Each value indicates whether amphoB was used in the condition.
Calu3	logical. if TRUE, fit model to Calu3 data, if FALSE, use HAE data
PCR	logical. whether to include PCR data (TRUE) or only plaque data (FALSE)
mvr	logical. If TRUE, use multivariate proposal, if FALSE, use univariate proposal.
length_run	integer. If length == 1, short run (for testing purposes); if length == 2, normal run; if length = 3, extra long run. otherwise, run until convergence
run_flag	logial. if TRUE, run and postprocess; if FALSE, postprocess only

Value

NULL (results saved to file)

ada-w-yan/deltaomicron1 documentation built on June 24, 2022, 5:41 a.m.