run_exp_camostat_shared_pars: mutlstrain fit with some shared parameters

In ada-w-yan/deltaomicron1: Fit model to Delta and Omicron growth curves with and without Camostat

mutlstrain fit with some shared parameters

Description

mutlstrain fit with some shared parameters

Usage

run_exp_camostat_shared_pars(
  save_dir,
  strain,
  PCR = FALSE,
  n_L = 1,
  n_I = 1,
  camostat_only = FALSE,
  different_eclipse = FALSE,
  reparameterise = FALSE,
  k1_endosomal_limit = FALSE,
  separate_pars = c("prob_infection_tmprss2", "prob_infection_endosomal",
    "log10_burst_size"),
  mvr = TRUE,
  length_run = 2,
  run_flag = TRUE
)

Arguments

save_dir	string ending in "/": directory to save results in
strain	character vector. names of strains.
PCR	logical. whether to include PCR data (TRUE) or only plaque data (FALSE)
camostat_only	logical. Whether to fit camostat data only (TRUE) or but no drug and camostat data (FALSE)
different_eclipse	logical. if TRUE, fit different eclipse phases for the pathways
k1_endosomal_limit	logical. if TRUE, 0 <= k1_endosomal/k1_tmprss2 <= 1
mvr	logical. if TRUE, use multivariate proposal; if FALSE, use univariate proposal
length_run	integer. If length == 1, short run (for testing purposes); if length == 2, normal run; if length = 3, extra long run. otherwise, run until convergence
run_flag	logial. if TRUE, run and postprocess; if FALSE, postprocess only

Value

NULL (results saved to file)

ada-w-yan/deltaomicron1 documentation built on June 24, 2022, 5:41 a.m.