specify_camostat_parameters_fn: make parameter table

In ada-w-yan/deltaomicron1: Fit model to Delta and Omicron growth curves with and without Camostat

make parameter table

Description

make parameter table

Usage

specify_camostat_parameters_fn(
  n_L = 1,
  n_I = 1,
  different_eclipse = FALSE,
  assay = "plaque",
  PCR = FALSE,
  reparameterise = FALSE,
  k1_endosomal_limit = FALSE,
  strain_names
)

Arguments

k1_endosomal_limit	logical. if TRUE, 0 <= k1_endosomal/k1_tmprss2 <= 1
strain_names	vector of strings. Names of virus strains.
n_L:	integer. number of latent stages
n_I:	integer. number of infectious stages
assay:	string. "plaque" or "tcid50" (only affects observation threshold)
reparameterise:	logical. if FALSE, use beta, p etc, if TRUE, use probability of infection (beta T_0) / c, burst size, delta, c

Value

data_df frame with columns values: default parameter value names: internal name for parameter fixed: if 0, fit parameter, otherwise fix parameter lower_bound: lower bound of parameter for fitting upper_bound: upper bound of parameter for fitting steps: width of proposal distribution in parameter space names_plot: character vector which which to label parameter distribution plot

ada-w-yan/deltaomicron1 documentation built on June 24, 2022, 5:41 a.m.