README.md

In adamnc2/simpleSCDE: Simplified Cell Data Manipulation and SCDE Testing

Simplified Single-Cell Differential Expression Testing (simpleSCDE)

This repository contains an R package for data manipulation and the simplified methods for analyzing single-cell RNA-seq data. The R package, titled simpleSCDE, is a wrapper for a previously developed SCDE testing package created by the Kharchenko Lab at Harvard University.

Using simpleSCDE

Included in this repository is a vignette providing detailed installation instructions for the simpleSCDE package. A summary of available methods is also included in the vignette, in addition to example commands that can be run on your own machine.

Included Datasets

The simpleSCDE package includes large planarian muscle data from both Fincher et al. and Scimone et al. Instructions for downloading data are included in the provided instructional vignette.

Issues or Questions?

Any issues or questions regarding the process detailed above or the simpleSCDE package in general should be reported to https://github.com/adamnc2/simpleSCDE/issues.

adamnc2/simpleSCDE documentation built on May 7, 2019, 7:40 a.m.