pos_pos.label: Label a group of cells positive for one of two genes
In adamnc2/simpleSCDE: Simplified Cell Data Manipulation and SCDE Testing

Description Usage Arguments Value Examples

Label a group of cells positive for one of two genes

1 2	pos_pos.label(df, rowname.x, rowname.y, x = 100, y = 100, x.limit = 0, y.limit = 0, posname.x = "pos_x", posname.y = "pos_y")

`df`	A data frame
`rowname.x`	The name of a gene(row) to be measured for hits in provided cells
`rowname.y`	The name of a gene(row) to be measured for hits in provided cells
`x`	The minimum number of hits required to label a cell positive for the expression of a particular gene (default: 100)
`y`	The minimum number of hits required to label a cell positive for the expression of a particular gene (defualt: 100)
`x.limit`	The maximum number of hits of the gene defined by `rowname` that is allowed to be present in a negative cell (default: 0)
`y.limit`	The maximum number of hits of the gene defined by `rowname` that is allowed to be present in a negative cell (default: 0)
`posname.x`	The string to label cells that are determined to be positive for `rowname.x` (default: "pos_x")
`posname.y`	The string to label cells that are determined to be positive for `rowname.y` (default: "pos_y")

A named character vector that contains posname.x and posname.y, and all cells that do not qualify as positive or negative are omitted

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pos_neg.label(df = Fincher, rowname.x = "dd_Smed_v4_12111_0_1",
              rowname.y = "dd_Smed_22585_0_1", x = 100, y = 150 x.limit = 10,
             y.limit = 20, posname.x = "slit_pos", posname.y = "zic_pos")