Files in adamwaring/ClusterBurden
Rare variant association utilising burden and positional information.
.Rbuildignore
.gitignore
ClusterBurden.Rproj
DESCRIPTION
Meta/vignette.rds
NAMESPACE
R/BIN_test.r
R/BIN_test_WES.r
R/ClusterBurden_WES.r
R/annotate_with_gnomad_freqs.r
R/burden_test.r
R/burden_test_WES.r
R/canon_txs-data.r
R/clinvar_cases-data.r
R/collect_example_cases.r
R/collect_gnomad_controls.r
R/color_vector-data.r
R/combine_ps.r
R/econtrols-data.r
R/econtrols_nonpass-data.r
R/exome_cov-data.r
R/findRanges.r
R/find_genes.r
R/format_coverage.r
R/gcontrols-data.r
R/gcontrols_nonpass-data.r
R/gene_locations-data.r
R/genome_cov-data.r
R/get_residue_position.r
R/grmap_reduced-data.r
R/incomplete/OR_functions.r
R/incomplete/plotGAM.r
R/manhattan.r
R/nresidues-data.r
R/plot_distribs.r
R/plot_features.r
R/plot_residuals.r
R/plot_signif_distribs.r
R/remove_uncovered_residues.r
R/seq_features-data.r
R/x10_gnomad-data.r
README.md
bsignif_null_model_distribs.png
data/canon_txs.RData
data/clinvar_cases.RData
data/color_vector.RData
data/econtrols.RData
data/econtrols_nonpass.RData
data/exome_cov.RData
data/gcontrols.RData
data/gcontrols_nonpass.RData
data/gene_locations.RData
data/genome_cov.RData
data/grmap_reduced.RData
data/make_data_files/make_gnomad_clinvar_data.r
data/make_data_files/makedata.r
data/nresidues.RData
data/seq_features.RData
data/x10_gnomad.RData
doc/exome_vs_genomes_null_model.R
doc/exome_vs_genomes_null_model.Rmd
doc/exome_vs_genomes_null_model.html
doc/formatting_real_data_ClusterBurden.R
doc/formatting_real_data_ClusterBurden.Rmd
doc/formatting_real_data_ClusterBurden.html
doc/statistical_tests_ClusterBurden.R
doc/statistical_tests_ClusterBurden.Rmd
doc/statistical_tests_ClusterBurden.html
doc/whole_exome_scans_with_ClusterBurden.R
doc/whole_exome_scans_with_ClusterBurden.Rmd
doc/whole_exome_scans_with_ClusterBurden.html
man/BIN_test.Rd
man/BIN_test_WES.Rd
man/ClusterBurden_WES.Rd
man/annotate_with_gnomad_freqs.Rd
man/burden_test.Rd
man/burden_test_WES.Rd
man/canon_txs.Rd
man/clinvar_cases.Rd
man/collect_example_cases.Rd
man/collect_gnomad_controls.Rd
man/color_vector.Rd
man/combine_ps.Rd
man/econtrols.Rd
man/econtrols_nonpass.Rd
man/exome_cov.Rd
man/findRanges.Rd
man/find_genes.Rd
man/format_coverage.Rd
man/gcontrols.Rd
man/gcontrols_nonpass.Rd
man/gene_locations.Rd
man/genome_cov.Rd
man/get_residue_position.Rd
man/grmap_reduced.Rd
man/manhattan.Rd
man/nresidues.Rd
man/plot_distribs.Rd
man/plot_features.Rd
man/plot_residuals.Rd
man/plot_signif_distribs.Rd
man/remove_uncovered_residues.Rd
man/seq_features.Rd
man/x10_gnomad.Rd
vignettes/exome_vs_genomes_null_model.Rmd
vignettes/formatting_real_data_ClusterBurden.Rmd
vignettes/statistical_tests_ClusterBurden.Rmd
vignettes/whole_exome_scans_with_ClusterBurden.Rmd
