Man pages for adeschen/gprofiler2cytoscape
From functional enrichment results to biological networks
| createBasicEmap | Create a basic enrichment map |
| createCXJSONForCytoscape | Create CX JSON text representing the network |
| createEnrichMap | Using functional enrichment results in gprofiler2 format to... |
| createEnrichMapMultiBasic | Using functional enrichment results in gprofiler2 format to... |
| createEnrichMapMultiComplex | Using functional enrichment results in gprofiler2 format to... |
| createMetaDataSectionCXJSON | Create meta data section for the CX JSON file |
| createMultiEmap | Create a basic enrichment map |
| createNetwork | Using functional enrichment results from gprofiler2 to create... |
| createNetworkForCytoscape | Create network and load it into Cytoscape |
| demoGOST | The result of a functional enrichment analysis done with... |
| enrichViewNet-package | From functional enrichment results to biological networks |
| extractInformationWhenIntersection | Extract node and edge information to be used to create... |
| extractInformationWhenNoIntersection | Extract information about nodes and edges to be used to... |
| extractNodesAndEdgesInformation | Extract node and edge information from the enrichment results |
| filterResults | Filter the results to retain only the selected terms |
| formatInformationForCXJSON | Transform the node and edge information into a format easy to... |
| isCytoscapeRunning | Verifying that Cytoscape is running |
| manageNameDuplicationInEmap | Change name description in data frame when more than one term... |
| manageQueryDuplicationInEmap | Change query name when more than one queries have the same... |
| parentalNapaVsDMSODEG | The result of a differential expression analysis done between... |
| parentalNapaVsDMSOEnrichment | The result of an enrichment analysis has been done using the... |
| removeRootTerm | Remove root term if present in the list of selected terms |
| rosaNapaVsDMSODEG | The result of a differential expression analysis done between... |
| rosaNapaVsDMSOEnrichment | The result of an enrichment analysis that has been done using... |
| validateCreateEnrichMapArguments | Validate arguments passed to createEnrichMap() function |
| validateCreateEnrichMapMultiArguments | Validate arguments passed to createEnrichMapMultiBasic()... |
| validateCreateEnrichMapMultiComplexArg | Validate arguments passed to... |
| validateCreateEnrichMapSubSectionArguments | Validate common arguments passed to createEnrichMap() and... |
| validateCreateNetworkArguments | Validate arguments passed to creatNetwork() function |
