enrichViewNet-package: From functional enrichment results to biological networks
In adeschen/gprofiler2cytoscape: From functional enrichment results to biological networks
enrichViewNet-package R Documentation
From functional enrichment results to biological networks
Description
The enrichViewNet package enables the visualization
of enrichment results, in a format corresponding to the one generated
by gprofiler2
(https://cran.r-project.org/web/packages/gprofiler2/index.html)
under the form of Cytoscape network (https://cytoscape.org/).
Details
In those networks, both gene datasets (GO terms/pathways/protein complexes)
and genes are represented as nodes. A edge connect a gene to its datasets.
In the current version, only genes present in at least one gene dataset
are retained.
Author(s)
Astrid Deschênes, Pascal Belleau, Robert L Faure,
Maria J Fernandes, David A Tuveson
Maintainer:
Astrid Deschênes <adeschen@hotmail.com>
See Also
createNetwork for transforming functional
enrichment results from gprofiler2 into a Cytoscape network
createEnrichMap for transforming functional
enrichment results from gprofiler2 into an enrichment map
adeschen/gprofiler2cytoscape documentation built on Nov. 4, 2024, 3:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| enrichViewNet-package | R Documentation |
From functional enrichment results to biological networks
Description
The enrichViewNet package enables the visualization
of enrichment results, in a format corresponding to the one generated
by gprofiler2
(https://cran.r-project.org/web/packages/gprofiler2/index.html)
under the form of Cytoscape network (https://cytoscape.org/).
Details
In those networks, both gene datasets (GO terms/pathways/protein complexes) and genes are represented as nodes. A edge connect a gene to its datasets. In the current version, only genes present in at least one gene dataset are retained.
Author(s)
Astrid Deschênes, Pascal Belleau, Robert L Faure, Maria J Fernandes, David A Tuveson
Maintainer: Astrid Deschênes <adeschen@hotmail.com>
See Also
createNetworkfor transforming functional enrichment results from gprofiler2 into a Cytoscape networkcreateEnrichMapfor transforming functional enrichment results from gprofiler2 into an enrichment map
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.