removeRootTerm: Remove root term if present in the list of selected terms
In adeschen/gprofiler2cytoscape: From functional enrichment results to biological networks
View source: R/methodsInternal.R
removeRootTerm R Documentation
Remove root term if present in the list of selected terms
Description
Remove root term if present in the list of selected terms
Usage
removeRootTerm(gostResult)
Arguments
gostResult
a data.frame containing the terms retained
for the creation of the network.
Value
a data.frame of selected terms without the root term.
Author(s)
Astrid Deschênes
Examples
## Loading dataset containing result from an enrichment analysis done with
## gprofiler2
data(demoGOST)
## Only retained the WikiPathways results
results <- demoGOST$result[demoGOST$result$source == "WP", ]
## Remove WIKIPATHWAYS root term
enrichViewNet:::removeRootTerm(gostResult=results)
adeschen/gprofiler2cytoscape documentation built on Nov. 4, 2024, 3:16 p.m.
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View source: R/methodsInternal.R
| removeRootTerm | R Documentation |
Remove root term if present in the list of selected terms
Description
Remove root term if present in the list of selected terms
Usage
removeRootTerm(gostResult)
Arguments
gostResult |
a |
Value
a data.frame of selected terms without the root term.
Author(s)
Astrid Deschênes
Examples
## Loading dataset containing result from an enrichment analysis done with
## gprofiler2
data(demoGOST)
## Only retained the WikiPathways results
results <- demoGOST$result[demoGOST$result$source == "WP", ]
## Remove WIKIPATHWAYS root term
enrichViewNet:::removeRootTerm(gostResult=results)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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