getCMfromBP: Converts centimorgan position to base-pair. Return a list of...
In adimitromanolakis/sim1000G: Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes
Description
Usage
Arguments
Examples
View source: R/recombination.R
Description
Converts centimorgan position to base-pair. Return a list of centimorgan positions that correspond
to the bp vector (in basepairs).
Usage
1
getCMfromBP(bp)
Arguments
bp
vector of base-pair positions
Examples
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library("sim1000G")
examples_dir = system.file("examples", package = "sim1000G")
vcf_file = sprintf("%s/region.vcf.gz", examples_dir)
vcf = readVCF( vcf_file, maxNumberOfVariants = 100,
min_maf = 0.12)
# For realistic data use the function downloadGeneticMap
generateUniformGeneticMap()
getCMfromBP(seq(1e6,100e6,by=1e6))
adimitromanolakis/sim1000G documentation built on Sept. 29, 2021, 3:44 a.m.
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Description Usage Arguments Examples
View source: R/recombination.R
Description
Converts centimorgan position to base-pair. Return a list of centimorgan positions that correspond to the bp vector (in basepairs).
Usage
1 | getCMfromBP(bp)
|
Arguments
bp |
vector of base-pair positions |
Examples
1 2 3 4 5 6 7 8 9 10 | library("sim1000G")
examples_dir = system.file("examples", package = "sim1000G")
vcf_file = sprintf("%s/region.vcf.gz", examples_dir)
vcf = readVCF( vcf_file, maxNumberOfVariants = 100,
min_maf = 0.12)
# For realistic data use the function downloadGeneticMap
generateUniformGeneticMap()
getCMfromBP(seq(1e6,100e6,by=1e6))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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