Files in adimitromanolakis/sim1000G
Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes

.Rbuildignore
.gitignore
DESCRIPTION
Makefile
NAMESPACE
R/1000G-package.r R/hapsim2-functions.R R/readvcf.R R/recombination.R R/simulation.R R/writeped.R README.md
extra/job-sim1000g-timings.sh
extra/sim1000G-timings.log.R
extra/sim1000G-timings.log.txt
extra/time1.png
include-filelist.txt
inst/CITATION
inst/datasets/README.txt
inst/doc/ExtractingRegionsForSimulation.html
inst/doc/SimulatingFamilyData.html
inst/examples/20130606_g1k.ped
inst/examples/chr4-geneticmap.txt
inst/examples/examine-maf-and-correlation.R inst/examples/example1-single-population.R inst/examples/example1x-single-population.R inst/examples/example2-population-stratification.R inst/examples/example2-stratification-qqplots-and-summary.R inst/examples/example4-population-stratification.R inst/examples/extract-1000genomes-genes.R inst/examples/generate-sim-cmds.R inst/examples/plot1.R
inst/examples/region-chr4-93-TMEM156.vcf.gz
inst/examples/region.vcf.gz
inst/examples/timings.R man/SIM.Rd man/computePairIBD1.Rd man/computePairIBD12.Rd man/computePairIBD2.Rd man/createVCF.Rd man/crossoverCDFvector.Rd man/downloadGeneticMap.Rd man/generateChromosomeRecombinationPositions.Rd man/generateFakeWholeGenomeGeneticMap.Rd man/generateRecombinationDistances.Rd man/generateRecombinationDistances_noInterference.Rd man/generateSingleRecombinationVector.Rd man/generateUniformGeneticMap.Rd man/generateUnrelatedIndividuals.Rd man/geneticMap.Rd man/getCMfromBP.Rd man/loadSimulation.Rd man/newFamily3generations.Rd man/newFamilyWithOffspring.Rd man/newNuclearFamily.Rd man/pkg.opts.Rd man/plotRegionalGeneticMap.Rd man/printMatrix.Rd man/readGeneticMap.Rd man/readGeneticMapFromFile.Rd man/readVCF.Rd man/retrieveGenotypes.Rd man/saveSimulation.Rd man/setRecombinationModel.Rd man/sim1000G-package.Rd man/startSimulation.Rd man/subsetVCF.Rd man/writePED.Rd
sim1000G.Rproj
tests/tests.R tests/testthat.R
tests/testthat/test1.geneticmap.txt
tests/testthat/test1.vcf.rdata
tests/testthat/test_2.R vignettes/ExtractingRegionsForSimulation.Rmd
vignettes/ExtractingRegionsForSimulation.html
vignettes/SimulatingFamilyData.Rmd
vignettes/SimulatingFamilyData.html
adimitromanolakis/sim1000G documentation built on Feb. 20, 2018, 11:17 a.m.