select_taxa | R Documentation |
Select (a subset of) taxa; if x
allows taxa to be reordered, then taxa are
given in the specified order.
select_taxa(x, taxa, reorder = TRUE)
## S4 method for signature 'sample_data,character'
select_taxa(x, taxa)
## S4 method for signature 'otu_table,character'
select_taxa(x, taxa, reorder = TRUE)
## S4 method for signature 'taxonomyTable,character'
select_taxa(x, taxa, reorder = TRUE)
## S4 method for signature 'XStringSet,character'
select_taxa(x, taxa, reorder = TRUE)
## S4 method for signature 'phylo,character'
select_taxa(x, taxa)
## S4 method for signature 'phyloseq,character'
select_taxa(x, taxa, reorder = TRUE)
x |
A phyloseq object or phyloseq component object |
taxa |
Character vector of taxa to select, in requested order |
reorder |
Logical specifying whether to use the order in |
This is a simple selector function that is like prune_taxa(taxa, x)
when
taxa
is a character vector but always gives the taxa in the order taxa
if possible (that is, except for phy_tree's and phyloseq objects that
contain phy_tree's).
Michael R. McLaren (orcid: 0000-0003-1575-473X)
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