clearCode34: Call Clearcode34 ccA ccB subtypes

In aedin/KidneyCancerSubtypes: Calls KIRC cancer subtypes including ClearCode34 ccA ccB subtypes

Usage

clearCode34()

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function () 
{
    library(pamr)
    load("../data/xn.rda")
    load("../data/classes.rda")
    trainSet <- list(x = scale(xn), y = classes, geneid = rownames(xn), 
        genenames = rownames(xn))
    mytrain <- pamr.train(trainSet)
    class(mytrain) <- c(class(mytrain), "clearCode34")
    return(mytrain)
  }

aedin/KidneyCancerSubtypes documentation built on May 10, 2019, 7:28 a.m.