Files in aertslab/AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
DESCRIPTION
NAMESPACE
NEWS
R/01_buildRankings.R
R/02_calcAUC.R
R/03_exploreThresholds.R
R/aux_AUCell_assignCells.R
R/aux_AUCell_plotHist.R
R/aux_AUCell_plotTSNE.R
R/aux_AUCell_run_byBlocks.R
R/aux_binarizeAUC.R
R/aux_getSetNames.R
R/aux_methods.R
R/aux_orderAUC.R
R/aux_plotEmb_rgb.R
R/aux_plotGeneCount.R
R/aux_thresholds.R
R/aux_updateAucellResults.R
R/class_aucellResults.R
R/priv_auc.assignmnetThreshold_v6.R
R/priv_plots.R
README.md
inst/CITATION
inst/doc/AUCell.html
inst/examples/cellsTsne.RData
inst/examples/example_AUCell_buildRankings.R
inst/examples/example_AUCell_calcAUC.R
inst/examples/example_AUCell_exploreThresholds.R
inst/examples/example_AUCell_plotHist.R
inst/examples/example_AUCell_plotTSNE.R
inst/examples/example_AUCell_run.R
inst/examples/example_aucellResults_class.R
inst/examples/example_geneSet_methods.R
inst/examples/geneSignatures.gmt
inst/examples/mouseBrain_cellLabels.tsv
man/AUCell_assignCells.Rd
man/AUCell_buildRankings.Rd
man/AUCell_calcAUC.Rd
man/AUCell_exploreThresholds.Rd
man/AUCell_plotHist.Rd
man/AUCell_plotTSNE.Rd
man/AUCell_run.Rd
man/GeneSet-methods.Rd
man/aucellResults-class.Rd
man/getSetNames.Rd
man/orderAUC.Rd
man/plotEmb_rgb.Rd
man/plotGeneCount.Rd
man/plotTsne_cellProps.Rd
man/updateAucellResults.Rd
tests/testthat.R
tests/testthat/test_AUCell_buildRankings.R
tests/testthat/test_AUCell_calcAUC.R
tests/testthat/test_AUCell_exploreThresholds.R
tests/testthat/test_AUCell_plot.R
tests/testthat/test_AUCell_run.R
tests/testthat/test_GeneSet_methods.R
tests/testthat/test_class_aucResults.R
tests/testthat/test_plotGeneCount.R
vignettes/AUCell.Rmd
vignettes/corrected.css
