wrapper_flag_interpolate: Wrapper for qc_flag_interpolate (R workflow)

In afsc-gap-products/gapctd: Process CTD data from bottom trawl surveys

Wrapper for qc_flag_interpolate (R workflow)

Description

Visually inspect and interpolate errors. See documentation for gapctd:::qc_flag_interpolate()

Usage

wrapper_flag_interpolate(
  rds_dir_path,
  in_pattern = NULL,
  append_pattern = NULL,
  review = c("density", "salinity"),
  bin_var = "depth"
)

Arguments

rds_dir_path	Filepath to directory containing rds files to be reviewed.
in_pattern	Character vector search pattern for input files.
append_pattern	Characters to append to output file name.
review	Passed to qc_flag_interpolate(). Variable to review ("density", "temperature" or "salinity"). Default = "density"
bin_var	Name of variable that was used to bin data ("depth" or "pressure").

Value

rds files with flagged conductivity and temperature removed and interpolated; derived quantities recalculated.

Author(s)

Sean Rohan

afsc-gap-products/gapctd documentation built on March 5, 2025, 3:42 a.m.