wrapper_run_gapctd: Wrapper function for run_ctd (R workflow)

In afsc-gap-products/gapctd: Process CTD data from bottom trawl surveys

Wrapper function for run_ctd (R workflow)

Description

Runs run_ctd() on all cnv files in a filepath.

Usage

wrapper_run_gapctd(
  cnv_dir_path = here::here("cnv"),
  processing_method,
  haul_df = NULL,
  vessel = NULL,
  cruise = NULL,
  channel = NULL,
  racebase_tzone = "America/Anchorage",
  ctd_tzone = "America/Anchorage"
)

Arguments

cnv_dir_path	Path to directory containing cnv files to be processed.
processing_method	Name of processing method; for saving output.
haul_df	Optional. data.frame containing haul data from RACEBASE. Must provide arguments for vessel and cruise if not provided.
vessel	Optional. Vessel code as a 1L numeric vector.
cruise	Optional. Cruise code as a numeric vector (>= 1L).
channel	Optional. RODBC channel; only used when haul_df = NULL.
racebase_tzone	Time zone for events and start_time in racebase/race_data tables. Passed to get_haul_data()
ctd_tzone	Time zone for CTD events. Passed to run_gapctd().

Value

Writes rds files with cast data to /output/[processing_method]

afsc-gap-products/gapctd documentation built on March 5, 2025, 3:42 a.m.