Man pages for afukushima/MSEApdata
Metabolite-set data collection for pathway analysis in metabolomics
| fukushima17_INC | list of signicant metabolite set based on Fukushima et al.... |
| kusano | list of significant metabolites based on Kusano et al. Plant... |
| msea.example | An example INPUT list based on HMDB-IDs |
| mset10hmdb | An example UNIVERSE list based on HMDB-IDs |
| mset_AraCyc_format_HMDB | A metabolite set (HMDB-IDs) based on AraCyc |
| mset_AraCyc_format_KEGG | A metabolite set (KEGG COMPOUND-IDs) based on AraCyc |
| mset_AtMetExpress_Flavonoids_format_KNApSAcK | A metabolite set (KNApSAcK-IDs) based on AtMet |
| mset_AtMetExpress_Stress_format_KEGG | A metabolite set (KEGG COMPOUND-IDs) based on AtMet |
| mset_EcoCyc_format_HMDB | A metabolite set (HMDB-IDs) based on EcoCyc |
| mset_EcoCyc_format_KEGG | A metabolite set (KEGG COMPOUND-IDs) based on EcoCyc |
| mset_FlyCyc_format_KEGG | A metabolite set (KEGG COMPOUND-IDs) based on FlyCyc |
| mset_HumanCyc_format_KEGG | A metabolite set (KEGG COMPOUND-IDs) based on HumanCyc |
| mset_MetaCyc_format_HMDB | A metabolite set (HMDB IDs) based on MetaCyc |
| mset_MetaCyc_format_KEGG | A metabolite set (KEGG COMPOUND-IDs) based on MetaCyc |
| mset_MouseCyc_format_KEGG | A metabolite set (KEGG COMPOUND-IDs) based on MouseCyc |
| mset_PlantCyc_format_HMDB | A metabolite set (HMDB-IDs) based on PlantCyc |
| mset_PlantCyc_format_KEGG | A metabolite set (KEGG COMPOUND-IDs) based on PlantCyc |
| mset_Reactome_ATH_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_ATH_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_BTA_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_BTA_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_CEL_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_CEL_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_CFA_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_CFA_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_DDI_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_DDI_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_DME_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_DME_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_DRE_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_DRE_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_GGA_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_GGA_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_HSA_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_HSA_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_MMU_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_MMU_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_MTU_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_MTU_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_OSA_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_OSA_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_PFA_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_PFA_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_RNO_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_RNO_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_SCE_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_SCE_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_SPO_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_SPO_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_SSC_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_SSC_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_TGU_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_TGU_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_Reactome_XTR_format_HMDB | A metabolite set (HMDB IDs) based on Reactome |
| mset_Reactome_XTR_format_KEGG | A metabolite set (KEGG IDs) based on Reactome |
| mset_SMPDB_format_HMDB | A metabolite set (HMDB-IDs) based on SMPDB |
| mset_SMPDB_format_KEGG | A metabolite set (KEGG COMPOUND-IDs) based on SMPDB |
| mset_SMPDB_Metabolic_format_HMDB | A metabolite set (HMDB-IDs) based on SMPDB core metabolic... |
| supported.msets | Display supported metabolite-sets for metabolite set... |
