Description Usage Arguments Author(s) See Also Examples
The counts slot holds the count data as a matrix of non-negative integer count values, one row for each observational unit (gene or the like), and one column for each sample.
1 2 3 4 5 6 7 8 9 10 11 | ## S4 method for signature 'DESeqDataSet'
counts(object,normalized=FALSE)
## S4 replacement method for signature 'DESeqDataSet,matrix'
counts(object)<-value
## S4 method for signature 'DESeqDataSet'
counts(object, normalized = FALSE)
## S4 replacement method for signature 'DESeqDataSet,matrix'
counts(object) <- value
|
object |
a |
normalized |
logical indicating whether or not to divide the counts by the size factors or normalization factors before returning (normalization factors always preempt size factors) |
value |
an integer matrix |
Simon Anders
sizeFactors
, normalizationFactors
1 2 | dds <- makeExampleDESeqDataSet()
head(counts(dds))
|
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