API for ahmohamed/NetPathMiner
NetPathMiner for Biological Network Construction, Path Mining and Visualization
| Global functions | |
|---|---|
| .onLoad | Source code |
| KGML2igraph | Man page Source code |
| KGML_signal | Source code |
| NPM | Man page |
| NPMdefaults | Man page Source code |
| NetPathMiner | Man page |
| NetPathMiner-package | Man page |
| SBML2igraph | Man page Source code |
| SBML_signal | Source code |
| assignEdgeWeights | Man page Source code |
| biopax2igraph | Man page Source code |
| bpExpand.grid | Source code |
| bpGetAnnFromXRef | Source code |
| bpGetAnnotation | Source code |
| bpGetAttrbyID | Source code |
| bpMetabolicL2 | Source code |
| bpMetabolicL3 | Source code |
| bpSignalingL3 | Source code |
| check.file | Source code |
| colorVertexByAttr | Man page Source code |
| compROC | Source code |
| drawLegend | Source code |
| ex_biopax | Man page |
| ex_kgml_sig | Man page |
| ex_microarray | Man page |
| ex_sbml | Man page |
| expandComplexes | Man page Source code |
| extractPathNetwork | Man page Source code |
| fetchAttribute | Man page Source code |
| format_path | Source code |
| getAttrNames | Man page Source code |
| getAttrStatus | Man page Source code |
| getAttribute | Man page Source code |
| getGeneSetNetworks | Man page Source code |
| getGeneSets | Man page Source code |
| getPaths | Source code |
| getPathsAsEIDs | Man page Source code |
| graph.sizes | Source code |
| highlightPaths | Source code |
| layoutVertexByAttr | Man page Source code |
| makeGeneNetwork | Man page Source code |
| makeMetaboliteNetwork | Man page Source code |
| makeReactionNetwork | Man page Source code |
| pathClassifier | Man page Source code |
| pathCluster | Man page Source code |
| pathRanker | Man page Source code |
| pathsToBinary | Man page Source code |
| plotAllNetworks | Man page Source code |
| plotAllNetworks_internal | Source code |
| plotClassifierROC | Man page Source code |
| plotClusterMatrix | Man page Source code |
| plotClusterProbs | Man page Source code |
| plotClusters | Man page Source code |
| plotCytoscapeGML | Man page Source code |
| plotNetwork | Man page Source code |
| plotNetwork_internal | Source code |
| plotPathClassifier | Man page Source code |
| plotPathCluster | Man page Source code |
| plotPathROC | Source code |
| plotPaths | Man page Source code |
| predictPathClassifier | Man page Source code |
| predictPathCluster | Man page Source code |
| process.color | Source code |
| process.layout | Source code |
| processNetwork | Source code |
| rankPvalue | Source code |
| rankShortestPaths | Source code |
| registerMemoryErr | Man page Source code |
| reindexNetwork | Man page Source code |
| rmAttribute | Man page Source code |
| rmSmallCompounds | Man page Source code |
| setAttribute | Man page Source code |
| simplifyReactionNetwork | Man page Source code |
| stdAttrNames | Man page Source code |
| strWrap | Source code |
| striph | Source code |
| toGML | Source code |
| toGraphNEL | Man page Source code |
| vertexDeleteReconnect | Man page Source code |
