makeMetaboliteNetwork: Convert metabolic network to metabolite network.

In ahmohamed/NetPathMiner: NetPathMiner for Biological Network Construction, Path Mining and Visualization

Convert metabolic network to metabolite network.

Description

This function removes reaction nodes keeping them as edge attributes. The resulting network contains metabolite nodes only, where edges indicate that reaction conversions.

Usage

makeMetaboliteNetwork(graph)

Arguments

graph

A metabolic network.

Value

A reaction network.

Author(s)

Ahmed Mohamed

See Also

Other Network processing methods: expandComplexes(), makeReactionNetwork(), reindexNetwork(), rmSmallCompounds(), simplifyReactionNetwork(), vertexDeleteReconnect()

Examples

	## Conver a metabolic network to a metbolite network.
 data(ex_sbml) # bipartite metabolic network of Carbohydrate metabolism.
 mgraph <- makeMetaboliteNetwork(ex_sbml)

ahmohamed/NetPathMiner documentation built on Nov. 30, 2024, 1:18 a.m.