makeMetaboliteNetwork: Convert metabolic network to metabolite network.
In ahmohamed/NetPathMiner: NetPathMiner for Biological Network Construction, Path Mining and Visualization
makeMetaboliteNetwork R Documentation
Convert metabolic network to metabolite network.
Description
This function removes reaction nodes keeping them as edge attributes. The resulting
network contains metabolite nodes only, where edges indicate that reaction conversions.
Usage
makeMetaboliteNetwork(graph)
Arguments
graph
A metabolic network.
Value
A reaction network.
Author(s)
Ahmed Mohamed
See Also
Other Network processing methods: expandComplexes,
makeReactionNetwork,
reindexNetwork,
rmSmallCompounds,
simplifyReactionNetwork,
vertexDeleteReconnect
Examples
## Conver a metabolic network to a metbolite network.
data(ex_sbml) # bipartite metabolic network of Carbohydrate metabolism.
mgraph <- makeMetaboliteNetwork(ex_sbml)
ahmohamed/NetPathMiner documentation built on May 15, 2023, 12:53 p.m.
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| makeMetaboliteNetwork | R Documentation |
Convert metabolic network to metabolite network.
Description
This function removes reaction nodes keeping them as edge attributes. The resulting network contains metabolite nodes only, where edges indicate that reaction conversions.
Usage
makeMetaboliteNetwork(graph)
Arguments
graph |
A metabolic network. |
Value
A reaction network.
Author(s)
Ahmed Mohamed
See Also
Other Network processing methods: expandComplexes,
makeReactionNetwork,
reindexNetwork,
rmSmallCompounds,
simplifyReactionNetwork,
vertexDeleteReconnect
Examples
## Conver a metabolic network to a metbolite network.
data(ex_sbml) # bipartite metabolic network of Carbohydrate metabolism.
mgraph <- makeMetaboliteNetwork(ex_sbml)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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