ahmohamed/NetPathMiner: NetPathMiner for Biological Network Construction, Path Mining and Visualization

NetPathMiner is a general framework for network path mining using genome-scale networks. It constructs networks from KGML, SBML and BioPAX files, providing three network representations, metabolic, reaction and gene representations. NetPathMiner finds active paths and applies machine learning methods to summarize found paths for easy interpretation. It also provides static and interactive visualizations of networks and paths to aid manual investigation.

Getting started

Package details

AuthorAhmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp>, Tim Hancock <timothy.hancock@kuicr.kyoto-u.ac.jp>, Ichigaku Takigawa <takigawa@kuicr.kyoto-u.ac.jp>, Nicolas Wicker <nicolas.wicker@unistra.fr>
Bioconductor views Classification Clustering GraphAndNetwork Network Pathways
MaintainerAhmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp>
LicenseGPL (>= 2)
Version1.27.0
URL https://github.com/ahmohamed/NetPathMiner
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ahmohamed/NetPathMiner")
ahmohamed/NetPathMiner documentation built on Jan. 23, 2021, 4:06 a.m.