Files in ahmohamed/NetPathMiner
NetPathMiner for Biological Network Construction, Path Mining and Visualization
.BBSoptions
.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
NAMESPACE
NEWS
NetPathMiner.Rproj
R/NPM-package.R
R/dbExtract.R
R/netProcess.R
R/netWeight.R
R/pathClassifier.R
R/pathCluster.R
R/pathRank.R
R/plotPath.R
README.md
cleanup
cleanup.win
configure
configure.ac
configure.win
data-raw/ex_kgml_sig.R
data-raw/hsa04014.xml
data-raw/hsa04062.xml
data/ex_biopax.rda
data/ex_kgml_sig.rda
data/ex_microarray.rda
data/ex_sbml.rda
inst/CITATION
inst/extdata/env_data.RData
inst/extdata/hsa00860.xml
inst/extdata/porphyrin.sbml
man/KGML2igraph.Rd
man/MIRIAM.Rd
man/NPMdefaults.Rd
man/NetPathMiner-package.Rd
man/SBML2igraph.Rd
man/assignEdgeWeights.Rd
man/biopax2igraph.Rd
man/colorVertexByAttr.Rd
man/ex_biopax.Rd
man/ex_kgml_sig.Rd
man/ex_microarray.Rd
man/ex_sbml.Rd
man/extractPathNetwork.Rd
man/getAttr.Rd
man/getGeneSetNetworks.Rd
man/getGeneSets.Rd
man/getPathsAsEIDs.Rd
man/layoutVertexByAttr.Rd
man/makeGeneNetwork.Rd
man/makeMetaboliteNetwork.Rd
man/makeReactionNetwork.Rd
man/pathClassifier.Rd
man/pathCluster.Rd
man/pathRanker.Rd
man/pathsToBinary.Rd
man/plotAllNetworks.Rd
man/plotClassifierROC.Rd
man/plotClusters.Rd
man/plotCytoscape.Rd
man/plotNetwork.Rd
man/plotPathClassifier.Rd
man/plotPathCluster.Rd
man/plotPaths.Rd
man/predictPathClassifier.Rd
man/predictPathCluster.Rd
man/registerMemoryErr.Rd
man/reindexNetwork.Rd
man/rmSmallCompounds.Rd
man/simplifyReactionNetwork.Rd
man/toGraphNEL.Rd
man/vertexDeleteReconnect.Rd
src/Makevars.in
src/handlesegfault.c
src/handlesegfault.h
src/hme3m.c
src/hme3m.h
src/init.c
src/init.h
src/kgml_interface.cpp
src/methods.cpp
src/sbml_interface.cpp
src/sbml_interface.h
vignettes/NPMVignette.Rmd
vignettes/ROCplot.png
vignettes/example.R
