chip_rna_int | TO ADD |
convert_reg_matrix | Shrinks a regulatory data matrix to a gene matrix using the... |
data_glance | Glance at data ... |
dat_all | The epigenetic-gene mapping is the maximum peak across the... |
dist_mat | Computes the final distance matrix for comparisons of choice |
enrichment_test | Performs enrichment test for input genes against gene sets |
epiChoose | epiChoose. |
get_comb | epiView function for scatter plot |
limma_diff | What are the features that are separating 2 groups? |
make_auc_matrix | Make an n*p AUC matrix for a given sample set and mark |
make_count_matrix | TO ADD |
pca_drivers | TO ADD |
plot_pca | Takes a matrix and label information and produces a PCA plot |
prep_across_datatypes | Returns the intersect of samples across all ChIP datasets... |
prep_blueprint_chip | TO ADD |
prep_blueprint_rna | TO ADD |
prep_for_plot | Takes the set of all experiments and produces a data frame... |
prep_rna | Prepares RNA data so it is the same shape and format as the... |
quantile_norm | TO ADD |
radio_tool_tip | Adaptation of bsToolTip for radio buttons |
spotfire_view | Prepares data for a scattplot of data types plotted against... |
theme_thesis | Plotting parameters |
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