Man pages for aidanmacnamara/epiChoose
| chip_rna_int | TO ADD |
| convert_reg_matrix | Shrinks a regulatory data matrix to a gene matrix using the... |
| data_glance | Glance at data ... |
| dat_all | The epigenetic-gene mapping is the maximum peak across the... |
| dist_mat | Computes the final distance matrix for comparisons of choice |
| enrichment_test | Performs enrichment test for input genes against gene sets |
| epiChoose | epiChoose. |
| get_comb | epiView function for scatter plot |
| limma_diff | What are the features that are separating 2 groups? |
| make_auc_matrix | Make an n*p AUC matrix for a given sample set and mark |
| make_count_matrix | TO ADD |
| pca_drivers | TO ADD |
| plot_pca | Takes a matrix and label information and produces a PCA plot |
| prep_across_datatypes | Returns the intersect of samples across all ChIP datasets... |
| prep_blueprint_chip | TO ADD |
| prep_blueprint_rna | TO ADD |
| prep_for_plot | Takes the set of all experiments and produces a data frame... |
| prep_rna | Prepares RNA data so it is the same shape and format as the... |
| quantile_norm | TO ADD |
| radio_tool_tip | Adaptation of bsToolTip for radio buttons |
| spotfire_view | Prepares data for a scattplot of data types plotted against... |
| theme_thesis | Plotting parameters |
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