Files in aidanmacnamara/epiChoose
DESCRIPTION
NAMESPACE
R/chip_rna_int.R
R/convert_reg_matrix.R
R/data.R
R/data_glance.R
R/data_shape.R
R/dist_mat.R
R/enrichment_test.R
R/epiChoose.R
R/get_comb.R
R/get_intersect_members.R
R/joint_regulation_plot.R
R/limma_diff.R
R/make_auc_matrix.R
R/make_count_matrix.R
R/pca_and_plot.R
R/pca_drivers.R
R/plot_data_heatmap.R
R/plot_pca.R
R/prep_across_datatypes.R
R/prep_blueprint_chip.R
R/prep_for_plot.R
R/prep_rna.R
R/quantile_norm.R
R/radio_tool_tip.R
R/spotfire_view.R
R/theme_thesis.R
R/workspace_size.R
README.md
WiggleTools/wiggletools
data/gene_list_all.RData
data/mapping.RData
data/roi_reg.RData
data/roi_reg_other.RData
data/roi_tss.RData
inst/extdata/README.txt
inst/extdata/blueprint_files.tsv
inst/extdata/data_blueprint.csv
inst/extdata/data_deep.xlsx
inst/extdata/data_encode.csv
inst/extdata/data_gsk.xlsx
inst/extdata/data_other.csv
inst/extdata/rna/E-MTAB-3827.genes.fpkm.htseq2.tsv
inst/extdata/rna/E-MTAB-3827.genes.raw.htseq2.tsv
inst/extdata/rna/E-MTAB-3827.sdrf.txt
inst/extdata/rna/E-MTAB-4101.genes.fpkm.htseq2.tsv
inst/extdata/rna/E-MTAB-4101.sdrf.txt
inst/extdata/rna/E-MTAB-4101genes.raw.htseq2.tsv
inst/extdata/rna/E-MTAB-4729.genes.fpkm.htseq2.tsv
inst/extdata/rna/E-MTAB-4729.genes.raw.htseq2.tsv
inst/extdata/rna/E-MTAB-4729.sdrf.txt
inst/extdata/rna/E-MTAB-5191.genes.fpkm.htseq2.tsv
inst/extdata/rna/E-MTAB-5191.genes.raw.htseq2.tsv
inst/extdata/rna/E-MTAB-5191.sdrf.txt
inst/extdata/rna/E-MTAB-6867.genes.fpkm.htseq2.tsv
inst/extdata/rna/E-MTAB-6867.genes.raw.htseq2.tsv
inst/extdata/rna/E-MTAB-6867.sdrf.txt
inst/extdata/rna/E-MTAB-6869.genes.fpkm.htseq2.tsv
inst/extdata/rna/E-MTAB-6869.genes.raw.htseq2.tsv
inst/extdata/rna/E-MTAB-6869.sdrf.txt
inst/extdata/rna/E-MTAB-6870.genes.fpkm.htseq2.tsv
inst/extdata/rna/E-MTAB-6870.genes.raw.htseq2.tsv
inst/extdata/rna/E-MTAB-6870.sdrf.txt
inst/extdata/rna/expression_atlas.txt
inst/extdata/rna/rna_chip_mapping.xlsx
inst/extdata/roi_test.bed
inst/extdata/roi_test.out
man/chip_rna_int.Rd
man/convert_reg_matrix.Rd
man/dat_all.Rd
man/data_glance.Rd
man/dist_mat.Rd
man/enrichment_test.Rd
man/epiChoose.Rd
man/get_comb.Rd
man/limma_diff.Rd
man/make_auc_matrix.Rd
man/make_count_matrix.Rd
man/pca_drivers.Rd
man/plot_pca.Rd
man/prep_across_datatypes.Rd
man/prep_blueprint_chip.Rd
man/prep_blueprint_rna.Rd
man/prep_for_plot.Rd
man/prep_rna.Rd
man/quantile_norm.Rd
man/radio_tool_tip.Rd
man/spotfire_view.Rd
man/theme_thesis.Rd
ml/README
ml/make_binned_bed.sh
test/test.bed
test/test_clustering.R
test/test_consistency.R
test/test_correlation_mean_diffs.R
test/test_deep_chrome.R
test/test_distance.R
test/test_distance_project_2.R
test/test_figure_1.R
test/test_figure_2.R
test/test_figure_3.R
test/test_figure_3_include_enhancers.R
test/test_figure_4.R
test/test_figure_generate.R
test/test_manuscript_figures.R
test/test_mofa.R
test/test_normalisation.R
test/test_phic.R
test/test_server_speed.R
test/test_setup.R
test/test_slides.R
test/test_tensor.R
tests/testthat.R
tests/testthat/test-auc.R
vignettes/blueprint.R
vignettes/introduction.R
vignettes/introduction.Rmd
vignettes/introduction.html
vignettes/project_1.R
vignettes/project_2.R
vignettes/project_3.R
