make_auc_matrix: Make an n*p AUC matrix for a given sample set and mark

Description Usage Arguments Details

View source: R/make_auc_matrix.R

Description

This function takes as input a .csv file with fields: Label, Mark, Bigwig

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Usage

1
make_auc_matrix(input_data, roi, mark, tmp_dir, quantile_norm = TRUE)

Arguments

input_data

The metadata for each sample. A .csv/.xslx file that contains 'Label', 'Mark', and 'Bigwig' fields.

roi

Region of interest, a sorted Granges object that specifies the genomic regions to calculate AUC. It also need 'gene' in the metadata

mark

Which mark in input_data to use

root

TO ADD

Details

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aidanmacnamara/epiChoose documentation built on Dec. 26, 2021, 3:13 a.m.