Man pages for aiminy/ModifiedclusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters
| bitr | bitr |
| bitr_kegg | bitr_kegg |
| browseKEGG | browseKEGG |
| buildGOmap | buildGOmap |
| clusterProfiler-package | statistical analysis and visualization of functional profiles... |
| compareCluster | Compare gene clusters functional profile |
| compareClusterResult-class | Class "compareClusterResult" This class represents the... |
| DataSet | Datasets gcSample contains a sample of gene clusters. |
| dotplot-methods | dotplot |
| download_KEGG | download_KEGG |
| dropGO | dropGO |
| enrichDAVID | enrichDAVID |
| enricher | enricher |
| enrichGO | GO Enrichment Analysis of a gene set. Given a vector of... |
| enrichKEGG | KEGG Enrichment Analysis of a gene set. Given a vector of... |
| enrichMKEGG | KEGG Module Enrichment Analysis of a gene set. Given a vector... |
| fortify | fortify |
| getGOLevel | get GOIDs at a specific level |
| Gff2GeneTable | Gff2GeneTable |
| go2ont | go2ont |
| go2term | go2term |
| gofilter | gofilter |
| groupGO | Functional Profile of a gene set at specific GO level. Given... |
| groupGOResult-class | Class "groupGOResult" This class represents the result of... |
| GSEA | GSEA |
| gseGO | gseGO |
| gseKEGG | gseKEGG |
| gseMKEGG | gseMKEGG |
| idType | idType |
| merge_result | merge_result |
| plotGOgraph | plotGOgraph |
| plot-methods | plot method |
| plotting.clusterProfile | plotting-clusterProfile |
| read.gmt | read.gmt |
| search_kegg_organism | search_kegg_organism |
| simplify-methods | simplify method |
| viewKEGG | viewKEGG function is for visualize KEGG pathways works with... |
