enrichDAVID: enrichDAVID
In aiminy/ModifiedclusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters
Description
Usage
Arguments
Value
Author(s)
Description
enrichment analysis by DAVID
Usage
1
2
3
4
enrichDAVID(gene, idType = "ENTREZ_GENE_ID", listType = "Gene",
minGSSize = 10, maxGSSize = 500, annotation = "GOTERM_BP_FAT",
pvalueCutoff = 0.05, pAdjustMethod = "BH", qvalueCutoff = 0.2,
species = NA, david.user)
Arguments
gene
input gene
idType
id type
listType
list Type
minGSSize
minimal size of genes annotated for testing
maxGSSize
maximal size of genes annotated for testing
annotation
david annotation
pvalueCutoff
pvalueCutoff
pAdjustMethod
one of "BH" and "bonferroni"
qvalueCutoff
qvalutCutoff
species
species
david.user
david user
Value
A enrichResult instance
Author(s)
Guangchuang Yu
aiminy/ModifiedclusterProfiler documentation built on May 10, 2019, 7:37 a.m.
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Description Usage Arguments Value Author(s)
Description
enrichment analysis by DAVID
Usage
1 2 3 4 | enrichDAVID(gene, idType = "ENTREZ_GENE_ID", listType = "Gene",
minGSSize = 10, maxGSSize = 500, annotation = "GOTERM_BP_FAT",
pvalueCutoff = 0.05, pAdjustMethod = "BH", qvalueCutoff = 0.2,
species = NA, david.user)
|
Arguments
gene |
input gene |
idType |
id type |
listType |
list Type |
minGSSize |
minimal size of genes annotated for testing |
maxGSSize |
maximal size of genes annotated for testing |
annotation |
david annotation |
pvalueCutoff |
pvalueCutoff |
pAdjustMethod |
one of "BH" and "bonferroni" |
qvalueCutoff |
qvalutCutoff |
species |
species |
david.user |
david user |
Value
A enrichResult instance
Author(s)
Guangchuang Yu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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