viewKEGG: viewKEGG function is for visualize KEGG pathways works with...

In aiminy/ModifiedclusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters

Description

viewKEGG function is for visualize KEGG pathways works with enrichResult object to visualize enriched KEGG pathway

Usage

viewKEGG(obj, pathwayID, foldChange, color.low = "green",
  color.high = "red", kegg.native = TRUE, out.suffix = "clusterProfiler")

Arguments

obj	enrichResult object
pathwayID	pathway ID or index
foldChange	fold change values
color.low	color of low foldChange genes
color.high	color of high foldChange genes
kegg.native	logical
out.suffix	suffix of output file

References

Luo et al. (2013) Pathview: an R/Bioconductor package for pathway-based data integration and visualization. Bioinformatics (Oxford, England), 29:14 1830–1831, 2013. ISSN 1367-4803 http://bioinformatics.oxfordjournals.org/content/abstract/29/14/1830.abstract PMID: 23740750

aiminy/ModifiedclusterProfiler documentation built on May 10, 2019, 7:37 a.m.