NPMdefaults: Default values for NetPathMiner

In aiminy/NetPathMiner: NetPathMiner for Biological Network Construction, Path Mining and Visualization

Description

This function gets a NetPathMiner default value for a variable.

Usage

NPMdefaults(value)

Arguments

value

a character string indicating the variable name.

Details

NetPathMiner defines the following defaults:

• small.comp.ls Dataframe of ubiquitous metabolites. Used by rmSmallCompounds.

• bridge Dataframe of attributes supported by Brigde Database. Used by fetchAttribute.

• bridge.organisms A list of bridge supported organisms. Used by fetchAttribute.

• bridge.web The base URL for Brigde Database webservices. Used by fetchAttribute.

Value

The defuult value for the given variable.

Author(s)

Ahmed Mohamed

Examples

 # Get the default list of small compounds (uniquitous metabolites).
 NPMdefaults("small.comp.ls")
 

aiminy/NetPathMiner documentation built on May 12, 2019, 3:38 a.m.