Cbs: Cbs

In aiminy/PathwaySplice: An R Package for Adjusting Bias in Gene Set Enrichment Analysis

Description

Cbs is to check possible bias factor using the method in goseq

Usage

Cbs(re.gene.based, ad = "GL", sub_feature = NULL, threshold, genomeID,
  geneID, gene_model, method)

Arguments

re.gene.based	Gene based table
ad	The possible bias factor
sub_feature	The possible bias factor
threshold	threshold used
genomeID	which genome
geneID	which type of gene ID
gene_model	Gene model
method	which method

Value

A data frame that includes gene ID, status of differential gene and probability weight function

Examples

data(mds)
Cbs(mds,ad='E',sub_feature='E',threshold=0.05)

aiminy/PathwaySplice documentation built on May 10, 2019, 7:38 a.m.