LRtestBias: LRtestBias
In aiminy/PathwaySplice: An R Package for Adjusting Bias in Gene Set Enrichment Analysis
Description
Usage
Arguments
Value
Examples
Description
Logistic regression to check bias
Usage
1
2
LRtestBias(jscs_genewise_object, genewise.pvalue = "geneWisePadj",
sig.threshold = 0.05, type = c("exon", "splicing"), boxplot_width)
Arguments
jscs_genewise_object
gene based table returned
from ReformatData and MakeGeneWiseTable_JunctionSeq
genewise.pvalue
whether you use smallest p value or geneWisePadj
sig.threshold
threshold to define differential gene list
type
whether you are interested in exon or splicing junction
boxplot_width
parameter for boxplot width
Value
return results from logistic regression
Examples
1
2
data(mds)
re<-LRtestBias(mds)
aiminy/PathwaySplice documentation built on May 10, 2019, 7:38 a.m.
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Description Usage Arguments Value Examples
Description
Logistic regression to check bias
Usage
1 2 | LRtestBias(jscs_genewise_object, genewise.pvalue = "geneWisePadj",
sig.threshold = 0.05, type = c("exon", "splicing"), boxplot_width)
|
Arguments
jscs_genewise_object |
gene based table returned from ReformatData and MakeGeneWiseTable_JunctionSeq |
genewise.pvalue |
whether you use smallest p value or geneWisePadj |
sig.threshold |
threshold to define differential gene list |
type |
whether you are interested in exon or splicing junction |
boxplot_width |
parameter for boxplot width |
Value
return results from logistic regression
Examples
1 2 | data(mds)
re<-LRtestBias(mds)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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