makeGeneWiseTable: makeGeneWiseTable
In aiminy/PathwaySplice: An R Package for Adjusting Bias in Gene Set Enrichment Analysis
Description
Usage
Arguments
Value
Examples
Description
This function is used to generate the gene-based results
Usage
1
makeGeneWiseTable(jscs, gene.list, FDR.threshold = 0.05, verbose = TRUE)
Arguments
jscs
output from JunctionSeq
gene.list
gene list
FDR.threshold
threshold to define whether exon or splicing junction is differential used
verbose
whether to print runing process
Value
A gene based table
Examples
1
2
#re.example.gene.based<-makeGeneWiseTable(Re.example,
#gene.list=unique(as.character(fData(Re.example)$geneID)))
aiminy/PathwaySplice documentation built on May 10, 2019, 7:38 a.m.
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Description Usage Arguments Value Examples
Description
This function is used to generate the gene-based results
Usage
1 | makeGeneWiseTable(jscs, gene.list, FDR.threshold = 0.05, verbose = TRUE)
|
Arguments
jscs |
output from JunctionSeq |
gene.list |
gene list |
FDR.threshold |
threshold to define whether exon or splicing junction is differential used |
verbose |
whether to print runing process |
Value
A gene based table
Examples
1 2 | #re.example.gene.based<-makeGeneWiseTable(Re.example,
#gene.list=unique(as.character(fData(Re.example)$geneID)))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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