NRSF.anno: Annotations of 4,828 NRSF (REST) motif instances.

In ajank/Romulus: Robust Multi-State Identification of Transcription Factor Binding Sites

Description

A dataset containing the annotations of 4,828 NRSF (REST) motif instances in the human genome (hg19 assembly).

Usage

NRSF.anno

Format

A data frame with 4828 rows and 6 variables:

chrom

chromosome

start

starting base pair (1-based, inclusive)

end

ending base pair

strand

strand ("-" or "+")

score

Position Weight Matrix score (log-likelihood)

signalValue

ChIP-seq signal value in K562 cells

Source

Motif instances are downloaded from http://homer.salk.edu/homer/ (HOMER Known Motifs track).

ChIP-seq signal value was extracted from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeAwgTfbsUniform/wgEncodeAwgTfbsHaibK562NrsfV0416102UniPk.narrowPeak.gz.

ajank/Romulus documentation built on May 10, 2019, 8:01 a.m.