NRSF.cuts: DNase I cuts around 4,828 NRSF (REST) motif instances.
In ajank/Romulus: Robust Multi-State Identification of Transcription Factor Binding Sites
Description
Usage
Format
Source
Description
A dataset containing the exact numbers of DNase I cuts around 4,828 NRSF (REST) motif instances, split into forward and reverse strand cuts.
Usage
1
Format
An integer matrix with 4828 rows and 838 columns. Columns 1-419 correspond to forward strand cuts (200 bp upstream + 19 bp motif site + 200 bp downstream), while columns 420-838 correspond to reverse strand cuts at the same positions.
Source
Extracted from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseK562AlnRep1V2.bam.
ajank/Romulus documentation built on May 10, 2019, 8:01 a.m.
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Description Usage Format Source
Description
A dataset containing the exact numbers of DNase I cuts around 4,828 NRSF (REST) motif instances, split into forward and reverse strand cuts.
Usage
1 |
Format
An integer matrix with 4828 rows and 838 columns. Columns 1-419 correspond to forward strand cuts (200 bp upstream + 19 bp motif site + 200 bp downstream), while columns 420-838 correspond to reverse strand cuts at the same positions.
Source
Extracted from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseK562AlnRep1V2.bam.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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