Files in ajrominger/RarePlusComMinus
A package in support of the manuscript ""

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/abundance_matrices.R R/fitdistrNB.R R/indSwapTest.R R/nbFit.R R/nbLLZ.R R/plusMinus.R R/plusMinusIndSwap.R R/schoener.R R/simPlusMinus.R R/ssadSim.R README.md
data/abundMats.RData
man/abundMats.Rd man/fitdistrNB.Rd man/nbFit.Rd man/nbLLZ.Rd man/plusMinus.Rd man/plusMinusIndSwap.Rd man/schoener.Rd man/simPlusMinus.Rd man/ssadSim.Rd manuscript/RarePlusComMinus.Rmd
manuscript/RarePlusComMinus.bib
manuscript/RarePlusComMinus.log
manuscript/RarePlusComMinus.pdf
manuscript/RarePlusComMinus.tex
manuscript/RarePlusComMinus_cache/latex/sim_plusMinus_comp_6cc13e66dd5a4937c01b59854c878f96.RData
manuscript/RarePlusComMinus_cache/latex/sim_plusMinus_comp_6cc13e66dd5a4937c01b59854c878f96.rdb
manuscript/RarePlusComMinus_cache/latex/sim_plusMinus_comp_6cc13e66dd5a4937c01b59854c878f96.rdx
manuscript/RarePlusComMinus_files/figure-latex/fig_plusMinus-1.pdf manuscript/RarePlusComMinus_files/figure-latex/ssadPerm_plot-1.pdf manuscript/RarePlusComMinus_supp.Rmd
manuscript/RarePlusComMinus_supp.aux
manuscript/RarePlusComMinus_supp.log
manuscript/RarePlusComMinus_supp.out
manuscript/RarePlusComMinus_supp.pdf
manuscript/RarePlusComMinus_supp_cache/latex/__packages
manuscript/RarePlusComMinus_supp_cache/latex/dAIC_by_abund_1139c5f37d20c2d0a9297db2917ec508.RData
manuscript/RarePlusComMinus_supp_cache/latex/dAIC_by_abund_1139c5f37d20c2d0a9297db2917ec508.rdb
manuscript/RarePlusComMinus_supp_cache/latex/dAIC_by_abund_1139c5f37d20c2d0a9297db2917ec508.rdx
manuscript/RarePlusComMinus_supp_cache/latex/fig2-estimates_c58893a605407066fc6e9918e1dc4780.RData
manuscript/RarePlusComMinus_supp_cache/latex/fig2-estimates_c58893a605407066fc6e9918e1dc4780.rdb
manuscript/RarePlusComMinus_supp_cache/latex/fig2-estimates_c58893a605407066fc6e9918e1dc4780.rdx
manuscript/RarePlusComMinus_supp_cache/latex/finiteK_abund_52c7837599b8cb97cb6118cd0205d9fa.RData
manuscript/RarePlusComMinus_supp_cache/latex/finiteK_abund_52c7837599b8cb97cb6118cd0205d9fa.rdb
manuscript/RarePlusComMinus_supp_cache/latex/finiteK_abund_52c7837599b8cb97cb6118cd0205d9fa.rdx
manuscript/RarePlusComMinus_supp_cache/latex/finiteK_comp_f6d45791fa43fd7706acc7d6a45398d9.RData
manuscript/RarePlusComMinus_supp_cache/latex/finiteK_comp_f6d45791fa43fd7706acc7d6a45398d9.rdb
manuscript/RarePlusComMinus_supp_cache/latex/finiteK_comp_f6d45791fa43fd7706acc7d6a45398d9.rdx
manuscript/RarePlusComMinus_supp_cache/latex/goodMLE_comp_39190e4802af5464093a75bc408782de.RData
manuscript/RarePlusComMinus_supp_cache/latex/goodMLE_comp_39190e4802af5464093a75bc408782de.rdb
manuscript/RarePlusComMinus_supp_cache/latex/goodMLE_comp_39190e4802af5464093a75bc408782de.rdx
manuscript/RarePlusComMinus_supp_cache/latex/goodMLE_thr_b7644100d0c20d7f7163268d47c79bb7.RData
manuscript/RarePlusComMinus_supp_cache/latex/goodMLE_thr_b7644100d0c20d7f7163268d47c79bb7.rdb
manuscript/RarePlusComMinus_supp_cache/latex/goodMLE_thr_b7644100d0c20d7f7163268d47c79bb7.rdx
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_commMax_b5f0e39458c1ace9bdfcb53c1d70564f.RData
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_commMax_b5f0e39458c1ace9bdfcb53c1d70564f.rdb
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_commMax_b5f0e39458c1ace9bdfcb53c1d70564f.rdx
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_comm_a78a2678aa2e4ab1268c0cc668e3963b.RData
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_comm_a78a2678aa2e4ab1268c0cc668e3963b.rdb
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_comm_a78a2678aa2e4ab1268c0cc668e3963b.rdx
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_rare_f061775813e9b26720427d8a5aff6339.RData
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_rare_f061775813e9b26720427d8a5aff6339.rdb
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_rare_f061775813e9b26720427d8a5aff6339.rdx
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_setup_8c1dd724508d0a8f47e85fbf1d363466.RData
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_setup_8c1dd724508d0a8f47e85fbf1d363466.rdb
manuscript/RarePlusComMinus_supp_cache/latex/mathEG_setup_8c1dd724508d0a8f47e85fbf1d363466.rdx
manuscript/RarePlusComMinus_supp_cache/latex/mathmat_fun_ea58cfade260d69648a2312c9f4ab5e9.RData
manuscript/RarePlusComMinus_supp_cache/latex/mathmat_fun_ea58cfade260d69648a2312c9f4ab5e9.rdb
manuscript/RarePlusComMinus_supp_cache/latex/mathmat_fun_ea58cfade260d69648a2312c9f4ab5e9.rdx
manuscript/RarePlusComMinus_supp_cache/latex/nb_po_llDist_b15edb73892ce1e398588c09df46be3f.RData
manuscript/RarePlusComMinus_supp_cache/latex/nb_po_llDist_b15edb73892ce1e398588c09df46be3f.rdb
manuscript/RarePlusComMinus_supp_cache/latex/nb_po_llDist_b15edb73892ce1e398588c09df46be3f.rdx
manuscript/RarePlusComMinus_supp_cache/latex/obs_data_942d6e98dd7f724db2c381203fe5ce16.RData
manuscript/RarePlusComMinus_supp_cache/latex/obs_data_942d6e98dd7f724db2c381203fe5ce16.rdb
manuscript/RarePlusComMinus_supp_cache/latex/obs_data_942d6e98dd7f724db2c381203fe5ce16.rdx
manuscript/RarePlusComMinus_supp_cache/latex/obs_plusMinus_comp_5ab76907df819f3c6f606e38801c8ce3.RData
manuscript/RarePlusComMinus_supp_cache/latex/obs_plusMinus_comp_5ab76907df819f3c6f606e38801c8ce3.rdb
manuscript/RarePlusComMinus_supp_cache/latex/obs_plusMinus_comp_5ab76907df819f3c6f606e38801c8ce3.rdx
manuscript/RarePlusComMinus_supp_cache/latex/plot_defaults_d0a44336c37854ea0474da92c6341672.RData
manuscript/RarePlusComMinus_supp_cache/latex/plot_defaults_d0a44336c37854ea0474da92c6341672.rdb
manuscript/RarePlusComMinus_supp_cache/latex/plot_defaults_d0a44336c37854ea0474da92c6341672.rdx
manuscript/RarePlusComMinus_supp_cache/latex/plusMinus_plotFuns_a12a4bd1537368bace3334ca4941a31b.RData
manuscript/RarePlusComMinus_supp_cache/latex/plusMinus_plotFuns_a12a4bd1537368bace3334ca4941a31b.rdb
manuscript/RarePlusComMinus_supp_cache/latex/plusMinus_plotFuns_a12a4bd1537368bace3334ca4941a31b.rdx
manuscript/RarePlusComMinus_supp_cache/latex/sadShape_comp_91b4cab0ce3a85d598709c336052a9ef.RData
manuscript/RarePlusComMinus_supp_cache/latex/sadShape_comp_91b4cab0ce3a85d598709c336052a9ef.rdb
manuscript/RarePlusComMinus_supp_cache/latex/sadShape_comp_91b4cab0ce3a85d598709c336052a9ef.rdx
manuscript/RarePlusComMinus_supp_cache/latex/sad_comp_153fa6116e222bb86bd407c1613dfdc8.RData
manuscript/RarePlusComMinus_supp_cache/latex/sad_comp_153fa6116e222bb86bd407c1613dfdc8.rdb
manuscript/RarePlusComMinus_supp_cache/latex/sad_comp_153fa6116e222bb86bd407c1613dfdc8.rdx
manuscript/RarePlusComMinus_supp_cache/latex/sim_indSwap_comp_4979d8eee385da7f309a5a5d828d8574.RData
manuscript/RarePlusComMinus_supp_cache/latex/sim_indSwap_comp_4979d8eee385da7f309a5a5d828d8574.rdb
manuscript/RarePlusComMinus_supp_cache/latex/sim_indSwap_comp_4979d8eee385da7f309a5a5d828d8574.rdx
manuscript/RarePlusComMinus_supp_cache/latex/sim_plusMinus_comp_6a2c381dbab848a0a7b3c8b5364597e8.RData
manuscript/RarePlusComMinus_supp_cache/latex/sim_plusMinus_comp_6a2c381dbab848a0a7b3c8b5364597e8.rdb
manuscript/RarePlusComMinus_supp_cache/latex/sim_plusMinus_comp_6a2c381dbab848a0a7b3c8b5364597e8.rdx
manuscript/RarePlusComMinus_supp_cache/latex/sim_plusMinus_setup_f976623da4d9da4f3846345b9df32835.RData
manuscript/RarePlusComMinus_supp_cache/latex/sim_plusMinus_setup_f976623da4d9da4f3846345b9df32835.rdb
manuscript/RarePlusComMinus_supp_cache/latex/sim_plusMinus_setup_f976623da4d9da4f3846345b9df32835.rdx
manuscript/RarePlusComMinus_supp_cache/latex/sim_pois_plusMinus_comp_aab1be8b356a6a3b60c21d0973af644d.RData
manuscript/RarePlusComMinus_supp_cache/latex/sim_pois_plusMinus_comp_aab1be8b356a6a3b60c21d0973af644d.rdb
manuscript/RarePlusComMinus_supp_cache/latex/sim_pois_plusMinus_comp_aab1be8b356a6a3b60c21d0973af644d.rdx
manuscript/RarePlusComMinus_supp_cache/latex/sim_simple_nb_plusMinus_comp_9de5d6796942dc8be9d11eed636bca3b.RData
manuscript/RarePlusComMinus_supp_cache/latex/sim_simple_nb_plusMinus_comp_9de5d6796942dc8be9d11eed636bca3b.rdb
manuscript/RarePlusComMinus_supp_cache/latex/sim_simple_nb_plusMinus_comp_9de5d6796942dc8be9d11eed636bca3b.rdx
manuscript/RarePlusComMinus_supp_cache/latex/sim_simple_pois_plusMinus_comp_dbb2a823eed49f885c75ec40cdc07060.RData
manuscript/RarePlusComMinus_supp_cache/latex/sim_simple_pois_plusMinus_comp_dbb2a823eed49f885c75ec40cdc07060.rdb
manuscript/RarePlusComMinus_supp_cache/latex/sim_simple_pois_plusMinus_comp_dbb2a823eed49f885c75ec40cdc07060.rdx
manuscript/RarePlusComMinus_supp_cache/latex/sim_simple_setup_c4c43bc3805d56551dd9118ebb9a6a16.RData
manuscript/RarePlusComMinus_supp_cache/latex/sim_simple_setup_c4c43bc3805d56551dd9118ebb9a6a16.rdb
manuscript/RarePlusComMinus_supp_cache/latex/sim_simple_setup_c4c43bc3805d56551dd9118ebb9a6a16.rdx
manuscript/RarePlusComMinus_supp_cache/latex/ssad_comp_23d8b4b2350913561917f9bee67ff8be.RData
manuscript/RarePlusComMinus_supp_cache/latex/ssad_comp_23d8b4b2350913561917f9bee67ff8be.rdb
manuscript/RarePlusComMinus_supp_cache/latex/ssad_comp_23d8b4b2350913561917f9bee67ff8be.rdx
manuscript/RarePlusComMinus_supp_cache/latex/ssad_lm_73843466c5214a2df3d3c2fca7b8d490.RData
manuscript/RarePlusComMinus_supp_cache/latex/ssad_lm_73843466c5214a2df3d3c2fca7b8d490.rdb
manuscript/RarePlusComMinus_supp_cache/latex/ssad_lm_73843466c5214a2df3d3c2fca7b8d490.rdx
manuscript/RarePlusComMinus_supp_cache/latex/ssad_perm_comp_29d85f93e2fc73cab6449e684d9f94d9.RData
manuscript/RarePlusComMinus_supp_cache/latex/ssad_perm_comp_29d85f93e2fc73cab6449e684d9f94d9.rdb
manuscript/RarePlusComMinus_supp_cache/latex/ssad_perm_comp_29d85f93e2fc73cab6449e684d9f94d9.rdx
manuscript/RarePlusComMinus_supp_cache/latex/ssad_perm_setup_17786976127d227e48663ae6eb488a41.RData
manuscript/RarePlusComMinus_supp_cache/latex/ssad_perm_setup_17786976127d227e48663ae6eb488a41.rdb
manuscript/RarePlusComMinus_supp_cache/latex/ssad_perm_setup_17786976127d227e48663ae6eb488a41.rdx
manuscript/RarePlusComMinus_supp_cache/latex/threading_f654624ded78dc8165145c40d8adc20e.RData
manuscript/RarePlusComMinus_supp_cache/latex/threading_f654624ded78dc8165145c40d8adc20e.rdb
manuscript/RarePlusComMinus_supp_cache/latex/threading_f654624ded78dc8165145c40d8adc20e.rdx
manuscript/RarePlusComMinus_supp_files/figure-latex/dAIC_by_abund-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/finiteK_abund-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/finiteK_plot-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/goodMLE_plot-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/goodMLE_thr-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/ind_swap_plot-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/nb_po_llDist-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/obs_plusMinus_plot-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/sadShape_plot-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/sim_simple_plot-1.pdf manuscript/RarePlusComMinus_supp_files/figure-latex/ssad_plot-1.pdf manuscript/RarePlusComMinus_titlePage.Rmd manuscript/RarePlusComMinus_titlePage.pdf
manuscript/geb.csl
manuscript/make.R manuscript/mathstuff.R
manuscript/nature.csl
rarePlusComMinus.Rproj
tests/testthat.R tests/testthat/test_fitdistrNB.R tests/testthat/test_nbFit.R tests/testthat/test_plusMinus.R tests/testthat/test_schoener.R tests/testthat/test_simPlusMinus.R
ajrominger/RarePlusComMinus documentation built on June 27, 2021, 9:25 p.m.