ssadSim: Simulate permuted SSADs
In ajrominger/RarePlusComMinus: A package in support of the manuscript ""

Description Usage Arguments Details Value Author(s)

View source: R/ssadSim.R

Simulate many SSADs and permute them to understand the effect of permutation on the shape of the SSAD

1	ssadSim(nsite, nspp, mcCores, sadfun, ssadfun, nsim)

`nsite`	number of sites to simulate
`nspp`	number of species to simulate
`mcCores`	number of cores to use in `parallel::mclapply`
`sadfun`	function to generate random SAD sample
`ssadfun`	function to generate random SSAD sample
`nsim`	number of simulations to run

Note, sadfun must be a function that takes a single argument n (number of species), e.g., function(n) pika::rfish(n, b = 0.1). Similarely, ssadfun must take both n (the number of sites) and also mu the mean abundance, e.g. function(n) rnbinom(n, size = 0.1, mu = mu).

a data.frame with columns giving the z-score of the two negative binomial parameters, and the difference in AIC values of the negative binomial versus the Poisson

Andy Rominger <ajrominger@gmail.com>

ajrominger/RarePlusComMinus documentation built on June 27, 2021, 9:25 p.m.